Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The crystal structure of the nucleosome containing H3.3 at 2.18 angstrom resolution

Results of the assignment of 289 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015x7x_I_DA1_DT2miBBB1390.62 BB13
0025x7x_I_DT2_DC3NANNANT00.66 BB02
0035x7x_I_DC3_DA4NANNANT00.52 BB02
0045x7x_I_DA4_DA5NANNANT00.48 BB10
0055x7x_I_DA5_DT6BBwBB03410.40 BB03
0065x7x_I_DT6_DA7BBwBB02110.37 BB02
0075x7x_I_DA7_DT8BBBBB01470.35 BB01
0085x7x_I_DT8_DC9NANNANT00.36 BB03
0095x7x_I_DC9_DC10NANNANT00.56 BB02
0105x7x_I_DC10_DA11BBwBB02370.41 BB02
0115x7x_I_DA11_DC12BBBBB00130.32 BB00
0125x7x_I_DC12_DC13BBBBB01310.24 BB01
0135x7x_I_DC13_DT14A-BAB03850.24 AB03
0145x7x_I_DT14_DG15B12BB04560.34 BB04
0155x7x_I_DG15_DC16BBBBB00420.27 BB00
0165x7x_I_DC16_DA17BB2BB07610.30 BB07
0175x7x_I_DA17_DG18BBBBB00860.22 BB00
0185x7x_I_DG18_DA19BBBBB00600.25 BB00
0195x7x_I_DA19_DT20miBBB15780.19 BB15
0205x7x_I_DT20_DT21BBBBB00910.17 BB00
0215x7x_I_DT21_DC22BBBBB00950.14 BB00
0225x7x_I_DC22_DT23BBwBB02540.22 BB02
0235x7x_I_DT23_DA24BBBBB00680.26 BB00
0245x7x_I_DA24_DC25B12BB04740.28 BB04
0255x7x_I_DC25_DC26BBBBB00860.23 BB00
0265x7x_I_DC26_DA27BB2BB07870.35 BB07
0275x7x_I_DA27_DA28BBBBB00760.24 BB00
0285x7x_I_DA28_DA29BB2BB08470.28 BB08
0295x7x_I_DA29_DA30BBBBB00270.33 BB00
0305x7x_I_DA30_DG31BBBBB00850.22 BB00
0315x7x_I_DG31_DT32miBBB15800.20 BB15
0325x7x_I_DT32_DG33BBBBB00620.14 BB00
0335x7x_I_DG33_DT34NANNANT00.44 BB13
0345x7x_I_DT34_DA35BBBBB00650.25 BB00
0355x7x_I_DA35_DT36BBwBB02860.19 BB02
0365x7x_I_DT36_DT37BBwBB02210.30 BB02
0375x7x_I_DT37_DT38NANNANT00.37 BB15
0385x7x_I_DT38_DG39BB2BB07830.20 BB07
0395x7x_I_DG39_DG40NANNANT00.57 BB02
0405x7x_I_DG40_DA41NANNANT00.47 BB10
0415x7x_I_DA41_DA42NANNANT00.29 BB00
0425x7x_I_DA42_DA43miBBB15180.25 BB15
0435x7x_I_DA43_DC44NANNANT00.60 BB02
0445x7x_I_DC44_DT45BBwBB03640.39 BB03
0455x7x_I_DT45_DG46NANNANT00.51 BB11
0465x7x_I_DG46_DC47BBwBB02160.40 BB02
0475x7x_I_DC47_DT48BB2BB08620.60 BB08
0485x7x_I_DT48_DC49NANNANT00.71 BB02
0495x7x_I_DC49_DC50B12BB04750.28 BB04
0505x7x_I_DC50_DA51BBBBB00560.13 BB00
0515x7x_I_DA51_DT52miBBB15740.18 BB15
0525x7x_I_DT52_DC53BBBBB00370.28 BB00
0535x7x_I_DC53_DA54BBBBB01450.20 BB01
0545x7x_I_DA54_DA55A-BAB03710.36 AB03
0555x7x_I_DA55_DA56BBBBB00390.17 BB00
0565x7x_I_DA56_DA57BB2BB07120.16 BB07
0575x7x_I_DA57_DG58B12BB04550.30 BB04
0585x7x_I_DG58_DG59BB2BB07440.21 BB07
0595x7x_I_DG59_DC60BBBBB00810.22 BB00
0605x7x_I_DC60_DA61B12BB04910.18 BB04
0615x7x_I_DA61_DT62BBBBB00610.17 BB00
0625x7x_I_DT62_DG63BBBBB00780.20 BB00
0635x7x_I_DG63_DT64BBBBB01570.16 BB01
0645x7x_I_DT64_DT65BBBBB01660.20 BB01
0655x7x_I_DT65_DC66BBBBB00570.17 BB00
0665x7x_I_DC66_DA67BB2BB07880.14 BB07
0675x7x_I_DA67_DG68B12BB04590.43 BB04
0685x7x_I_DG68_DC69BB2BB07610.20 BB07
0695x7x_I_DC69_DT70B12BB04580.24 BB04
0705x7x_I_DT70_DG71BBBBB00900.18 BB00
0715x7x_I_DG71_DA72BBBBB00900.26 BB00
0725x7x_I_DA72_DA73BBBBB00830.13 BB00
0735x7x_I_DA73_DT74BBwBB02470.21 BB02
0745x7x_I_DT74_DT75BBBBB00410.18 BB00
0755x7x_I_DT75_DC76BBBBB00900.15 BB00
0765x7x_I_DC76_DA77B12BB04680.28 BB04
0775x7x_I_DA77_DG78BB2BB08550.53 BB08
0785x7x_I_DG78_DC79B12BB04520.38 BB04
0795x7x_I_DC79_DT80B12BB04410.38 BB04
0805x7x_I_DT80_DG81B12BB04820.17 BB04
0815x7x_I_DG81_DA82BBBBB00840.17 BB00
0825x7x_I_DA82_DA83BBBBB00910.15 BB00
0835x7x_I_DA83_DC84miBBB15290.29 BB15
0845x7x_I_DC84_DA85BBBBB00620.34 BB00
0855x7x_I_DA85_DT86BBwBB02620.21 BB02
0865x7x_I_DT86_DG87BBBBB00300.35 BB00
0875x7x_I_DG87_DC88BB2BB07790.25 BB07
0885x7x_I_DC88_DC89BBBBB00630.28 BB00
0895x7x_I_DC89_DT90BB2BB07210.22 BB07
0905x7x_I_DT90_DT91BBBBB01730.17 BB01
0915x7x_I_DT91_DT92BBBBB00830.14 BB00
0925x7x_I_DT92_DT93BBBBB00790.22 BB00
0935x7x_I_DT93_DG94BBBBB00420.24 BB00
0945x7x_I_DG94_DA95BBBBB00580.39 BB00
0955x7x_I_DA95_DT96miBBB15730.18 BB15
0965x7x_I_DT96_DG97miBBB15270.31 BB15
0975x7x_I_DG97_DG98BBBBB00900.19 BB00
0985x7x_I_DG98_DA99BB2BB07890.18 BB07
0995x7x_I_DA99_DG100BBBBB00130.28 BB00
1005x7x_I_DG100_DC101BB2BB08600.29 BB08
1015x7x_I_DC101_DA102NANNANT00.66 BB02
1025x7x_I_DA102_DG103BBBBB00830.23 BB00
1035x7x_I_DG103_DT104BBwBB02690.24 BB02
1045x7x_I_DT104_DT105BBwBB02530.24 BB02
1055x7x_I_DT105_DT106miBBB15680.20 BB15
1065x7x_I_DT106_DC107BBBBB00560.20 BB00
1075x7x_I_DC107_DC108BB2BB08470.33 BB08
1085x7x_I_DC108_DA109BB2BB07320.43 BB07
1095x7x_I_DA109_DA110BBBBB00790.21 BB00
1105x7x_I_DA110_DA111B12BB04590.18 BB04
1115x7x_I_DA111_DT112BBBBB00440.33 BB00
1125x7x_I_DT112_DA113BBBBB00610.22 BB00
1135x7x_I_DA113_DC114NANNANT00.40 BB11
1145x7x_I_DC114_DA115BBBBB00550.31 BB00
1155x7x_I_DA115_DC116NANNANT00.33 BB02
1165x7x_I_DC116_DT117BBBBB00820.24 BB00
1175x7x_I_DT117_DT118BBwBB03780.34 BB03
1185x7x_I_DT118_DT119BBBBB01710.30 BB01
1195x7x_I_DT119_DT120miBBB15680.28 BB15
1205x7x_I_DT120_DG121B12BB04130.33 BB04
1215x7x_I_DG121_DG122BBBBB00720.37 BB00
1225x7x_I_DG122_DT123BBBBB01430.22 BB01
1235x7x_I_DT123_DA124BBBBB00130.34 BB00
1245x7x_I_DA124_DG125BBwBB11670.34 BB11
1255x7x_I_DG125_DA126miBBB15380.38 BB15
1265x7x_I_DA126_DA127BBBBB00310.25 BB00
1275x7x_I_DA127_DT128miBBB15770.27 BB15
1285x7x_I_DT128_DC129BBwBB02400.30 BB02
1295x7x_I_DC129_DT130BBBBB00100.46 BB00
1305x7x_I_DT130_DG131BB2BB08680.46 BB08
1315x7x_I_DG131_DC132miBBB15340.44 BB15
1325x7x_I_DC132_DA133BB2BB07580.18 BB07
1335x7x_I_DA133_DG134NANNANT00.48 BB02
1345x7x_I_DG134_DG135B-ABA08500.38 BA08
1355x7x_I_DG135_DT136BBBBB01590.26 BB01
1365x7x_I_DT136_DG137BBBBB00660.24 BB00
1375x7x_I_DG137_DG138B12BB04410.21 BB04
1385x7x_I_DG138_DA139BBBBB00150.33 BB00
1395x7x_I_DA139_DT140BBwBB02230.25 BB02
1405x7x_I_DT140_DA141miBBB15720.28 BB15
1415x7x_I_DA141_DT142BBBBB00330.27 BB00
1425x7x_I_DT142_DT143BBBBB01610.18 BB01
1435x7x_I_DT143_DG144BBBBB00570.25 BB00
1445x7x_I_DG144_DA145BBBBB00630.30 BB00
1455x7x_I_DA145_DT146NANNANT00.44 BB02
1465x7x_J_DT148_DC149NANNANT00.62 BB02
1475x7x_J_DC149_DA150NANNANT00.71 BB11
1485x7x_J_DA150_DA151NANNANT00.45 BB10
1495x7x_J_DA151_DT152BBwBB03460.38 BB03
1505x7x_J_DT152_DA153BBwBB02150.46 BB02
1515x7x_J_DA153_DT154BBBBB01510.35 BB01
1525x7x_J_DT154_DC155NANNANT00.42 BB03
1535x7x_J_DC155_DC156NANNANT00.59 BB02
1545x7x_J_DC156_DA157BBwBB02300.46 BB02
1555x7x_J_DA157_DC158BBBBB01210.41 BB01
1565x7x_J_DC158_DC159BBBBB01310.26 BB01
1575x7x_J_DC159_DT160A-BAB03820.29 AB03
1585x7x_J_DT160_DG161B12BB04650.28 BB04
1595x7x_J_DG161_DC162NANNANT00.41 BB02
1605x7x_J_DC162_DA163BB2BB07560.24 BB07
1615x7x_J_DA163_DG164BBBBB00780.21 BB00
1625x7x_J_DG164_DA165NANNANT00.35 BB08
1635x7x_J_DA165_DT166miBBB15760.21 BB15
1645x7x_J_DT166_DT167BBBBB00900.14 BB00
1655x7x_J_DT167_DC168BBBBB00950.14 BB00
1665x7x_J_DC168_DT169BBwBB02510.21 BB02
1675x7x_J_DT169_DA170BBBBB00660.27 BB00
1685x7x_J_DA170_DC171B12BB04690.18 BB04
1695x7x_J_DC171_DC172BBBBB00850.24 BB00
1705x7x_J_DC172_DA173BB2BB08670.39 BB08
1715x7x_J_DA173_DA174BBBBB00720.28 BB00
1725x7x_J_DA174_DA175BB2BB08370.34 BB08
1735x7x_J_DA175_DA176BBBBB00520.25 BB00
1745x7x_J_DA176_DG177BBBBB00830.14 BB00
1755x7x_J_DG177_DT178miBBB15800.22 BB15
1765x7x_J_DT178_DG179BBBBB00640.22 BB00
1775x7x_J_DG179_DT180NANNANT00.31 BA10
1785x7x_J_DT180_DA181BBBBB00720.20 BB00
1795x7x_J_DA181_DT182BBwBB02870.18 BB02
1805x7x_J_DT182_DT183BBwBB02200.31 BB02
1815x7x_J_DT183_DT184miBBB15530.34 BB15
1825x7x_J_DT184_DG185BB2BB07860.26 BB07
1835x7x_J_DG185_DG186BBBBB00660.27 BB00
1845x7x_J_DG186_DA187NANNANT00.52 BB10
1855x7x_J_DA187_DA188NANNANT00.31 BB00
1865x7x_J_DA188_DA189miBBB10180.36 BB10
1875x7x_J_DA189_DC190miBBB13740.29 BB13
1885x7x_J_DC190_DT191BBBBB00450.58 BB00
1895x7x_J_DT191_DG192BB2BB07740.16 BB07
1905x7x_J_DG192_DC193BBwBB02110.38 BB02
1915x7x_J_DC193_DT194BB2BB08740.35 BB08
1925x7x_J_DT194_DC195NANNANT00.77 BB02
1935x7x_J_DC195_DC196B12BB04660.32 BB04
1945x7x_J_DC196_DA197BBBBB00630.22 BB00
1955x7x_J_DA197_DT198miBBB15740.17 BB15
1965x7x_J_DT198_DC199BBBBB00470.28 BB00
1975x7x_J_DC199_DA200BBBBB01620.20 BB01
1985x7x_J_DA200_DA201BBBBB01400.30 BB01
1995x7x_J_DA201_DA202BBBBB00310.19 BB00
2005x7x_J_DA202_DA203BB2BB0760.29 BB07
2015x7x_J_DA203_DG204B12BB04640.23 BB04
2025x7x_J_DG204_DG205BB2BB07700.17 BB07
2035x7x_J_DG205_DC206BBBBB00820.20 BB00
2045x7x_J_DC206_DA207B12BB04880.18 BB04
2055x7x_J_DA207_DT208BBBBB00610.18 BB00
2065x7x_J_DT208_DG209BBBBB00790.19 BB00
2075x7x_J_DG209_DT210BBBBB01600.15 BB01
2085x7x_J_DT210_DT211BBBBB01610.24 BB01
2095x7x_J_DT211_DC212BBBBB00620.23 BB00
2105x7x_J_DC212_DA213BB2BB07780.17 BB07
2115x7x_J_DA213_DG214BB2BB07760.23 BB07
2125x7x_J_DG214_DC215B12BB04460.43 BB04
2135x7x_J_DC215_DT216B12BB04580.23 BB04
2145x7x_J_DT216_DG217BBBBB00650.31 BB00
2155x7x_J_DG217_DA218BBBBB00900.17 BB00
2165x7x_J_DA218_DA219BBBBB00840.16 BB00
2175x7x_J_DA219_DT220BBwBB02520.17 BB02
2185x7x_J_DT220_DT221BBBBB00530.15 BB00
2195x7x_J_DT221_DC222BBBBB00940.14 BB00
2205x7x_J_DC222_DA223B12BB04790.22 BB04
2215x7x_J_DA223_DG224BB2BB07870.13 BB07
2225x7x_J_DG224_DC225B12BB04610.47 BB04
2235x7x_J_DC225_DT226BB2BB07900.21 BB07
2245x7x_J_DT226_DG227BBBBB00480.33 BB00
2255x7x_J_DG227_DA228BBBBB00650.40 BB00
2265x7x_J_DA228_DA229BBBBB00930.13 BB00
2275x7x_J_DA229_DC230miBBB15350.25 BB15
2285x7x_J_DC230_DA231BBBBB00690.27 BB00
2295x7x_J_DA231_DT232BBwBB02600.23 BB02
2305x7x_J_DT232_DG233BBBBB00280.34 BB00
2315x7x_J_DG233_DC234BB2BB07750.23 BB07
2325x7x_J_DC234_DC235BBBBB00620.24 BB00
2335x7x_J_DC235_DT236B-ABA17860.22 BA17
2345x7x_J_DT236_DT237BBBBB00360.25 BB00
2355x7x_J_DT237_DT238BBBBB00890.16 BB00
2365x7x_J_DT238_DT239BBBBB00810.19 BB00
2375x7x_J_DT239_DG240BBBBB00410.22 BB00
2385x7x_J_DG240_DA241BBwBB02160.28 BB02
2395x7x_J_DA241_DT242miBBB15740.19 BB15
2405x7x_J_DT242_DG243miBBB15270.26 BB15
2415x7x_J_DG243_DG244BBBBB00930.11 BB00
2425x7x_J_DG244_DA245BB2BB07750.12 BB07
2435x7x_J_DA245_DG246NANNANT00.37 BB07
2445x7x_J_DG246_DC247BB2BB08430.46 BB08
2455x7x_J_DC247_DA248NANNANT00.54 BB02
2465x7x_J_DA248_DG249BBBBB00600.36 BB00
2475x7x_J_DG249_DT250BBwBB02590.26 BB02
2485x7x_J_DT250_DT251BBwBB02350.40 BB02
2495x7x_J_DT251_DT252miBBB15670.21 BB15
2505x7x_J_DT252_DC253BBBBB00650.20 BB00
2515x7x_J_DC253_DC254BB2BB08470.42 BB08
2525x7x_J_DC254_DA255BB2BB07370.32 BB07
2535x7x_J_DA255_DA256BBBBB00900.14 BB00
2545x7x_J_DA256_DA257B12BB04620.27 BB04
2555x7x_J_DA257_DT258BBwBB02650.21 BB02
2565x7x_J_DT258_DA259BBBBB00590.28 BB00
2575x7x_J_DA259_DC260NANNANT00.47 BA10
2585x7x_J_DC260_DA261BBBBB00620.27 BB00
2595x7x_J_DA261_DC262BBBBB00490.20 BB00
2605x7x_J_DC262_DT263BBBBB00790.19 BB00
2615x7x_J_DT263_DT264BBwBB03690.37 BB03
2625x7x_J_DT264_DT265BBBBB00640.22 BB00
2635x7x_J_DT265_DT266miBBB15670.29 BB15
2645x7x_J_DT266_DG267BB2BB07510.32 BB07
2655x7x_J_DG267_DG268BBBBB00810.25 BB00
2665x7x_J_DG268_DT269BBBBB01280.29 BB01
2675x7x_J_DT269_DA270BBBBB00170.37 BB00
2685x7x_J_DA270_DG271miBBB12570.52 BB12
2695x7x_J_DG271_DA272BBwBB02290.46 BB02
2705x7x_J_DA272_DA273BBBBB00630.25 BB00
2715x7x_J_DA273_DT274NANNANT00.26 BB02
2725x7x_J_DT274_DC275BBwBB02360.27 BB02
2735x7x_J_DC275_DT276NANNANT00.23 BB15
2745x7x_J_DT276_DG277BB2BB08600.39 BB08
2755x7x_J_DG277_DC278NANNANT00.56 BB15
2765x7x_J_DC278_DA279BB2BB07720.16 BB07
2775x7x_J_DA279_DG280NANNANT00.54 BB02
2785x7x_J_DG280_DG281B-ABA08460.43 BA08
2795x7x_J_DG281_DT282BBBBB01220.26 BB01
2805x7x_J_DT282_DG283BBBBB00660.25 BB00
2815x7x_J_DG283_DG284B12BB04310.22 BB04
2825x7x_J_DG284_DA285BBBBB01130.44 BB01
2835x7x_J_DA285_DT286BBwBB02150.26 BB02
2845x7x_J_DT286_DA287miBBB15740.23 BB15
2855x7x_J_DA287_DT288BBBBB01380.32 BB01
2865x7x_J_DT288_DT289BBBBB01680.14 BB01
2875x7x_J_DT289_DG290BBBBB00650.26 BB00
2885x7x_J_DG290_DA291BBBBB00420.40 BB00
2895x7x_J_DA291_DT292BBwBB02100.41 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N