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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of SepCysE-SepCysS in complex with tRNACys from Methanocaldococcus jannaschii

Results of the assignment of 74 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015x6b_P_G1_C2AAAAA08250.31 AA08
025x6b_P_C2_C3AAAAA00840.14 AA00
035x6b_P_C3_G4AAwAA01760.25 AA01
045x6b_P_G4_G5AAAAA00410.26 AA00
055x6b_P_G5_G6AAAAA08690.32 AA08
065x6b_P_G6_G7A-BAB05750.26 AB05
075x6b_P_G7_U8NANNANT00.55 OP11
085x6b_P_U8_A9NANNANT01.81 OP05
095x6b_P_A9_G10NANNANT01.58 OP04
105x6b_P_G10_U11NANNANT00.72 AA07
115x6b_P_U11_C12NANNANT00.48 BA01
125x6b_P_C12_U13NANNANT00.56 AA08
135x6b_P_U13_A14NANNANT00.69 AA10
145x6b_P_A14_G15AAAAA08440.50 AA08
155x6b_P_G15_G16NANNANT01.04 IC01
165x6b_P_G16_G17NANNANT02.17 OPS1
175x6b_P_G17_G18NANNANT00.51 IC06
185x6b_P_G18_C19NANNANT01.31 IC04
195x6b_P_C19_U20NANNANT01.25 OP11
205x6b_P_U20_A21NANNANT01.29 OP13
215x6b_P_A21_G22AAAAA08740.34 AA08
225x6b_P_G22_G23AAwAA01640.36 AA01
235x6b_P_G23_C24NANNANT00.61 AA10
245x6b_P_C24_A25NANNANT01.34 IC07
255x6b_P_A25_G26NANNANT01.95 OP01
265x6b_P_G26_C27AAuAA07340.68 AA07
275x6b_P_C27_G28AAAAA00470.42 AA00
285x6b_P_G28_G29AAAAA00870.14 AA00
295x6b_P_G29_A30AAwAA11720.29 AA11
305x6b_P_A30_C31NANNANT02.53 OP27
315x6b_P_C31_U32NANNANT00.79 AA04
325x6b_P_U32_G33AAAAA00810.18 AA00
335x6b_P_G33_C34AAwAA01800.27 AA01
345x6b_P_C34_A35AAwAA10480.54 AA10
355x6b_P_A35_G36AAwAA06250.41 AA06
365x6b_P_G36_A37AAwAA01290.34 AA01
375x6b_P_A37_U38AAwAA01320.41 AA01
385x6b_P_U38_C39AAAAA00920.17 AA00
395x6b_P_C39_C40NANNANT00.58 AA11
405x6b_P_C40_G41NANNANT00.52 AA08
415x6b_P_G41_C42AAAAA00580.39 AA00
425x6b_P_C42_C43NANNANT00.59 AA07
435x6b_P_C43_U44NANNANT00.84 ZZ01
445x6b_P_U44_U45NANNANT00.63 OP18
455x6b_P_U45_A46OPNOP13670.47 OP13
465x6b_P_A46_C47NANNANT00.49 AA11
475x6b_P_C47_G48NANNANT01.47 OP05
485x6b_P_G48_U49AAAAA00590.26 AA00
495x6b_P_U49_G50AAAAA00860.11 AA00
505x6b_P_G50_G51AAwAA01830.17 AA01
515x6b_P_G51_G52AAAAA08840.26 AA08
525x6b_P_G52_U53AAAAA00590.21 AA00
535x6b_P_U53_U54AAAAA00560.37 AA00
545x6b_P_U54_C55OPNOP04830.13 OP04
555x6b_P_C55_A56AAAAA00600.34 AA00
565x6b_P_A56_A57NANNANT00.60 IC03
575x6b_P_A57_A58OPNOP25690.27 OP25
585x6b_P_A58_U59A-BAB05630.41 AB05
595x6b_P_U59_C60OPNOP12830.15 OP12
605x6b_P_C60_C61AAAAA00720.24 AA00
615x6b_P_C61_C62AAAAA00690.17 AA00
625x6b_P_C62_A63AAAAA00800.14 AA00
635x6b_P_A63_C64AAAAA00880.12 AA00
645x6b_P_C64_C65AAAAA00690.28 AA00
655x6b_P_C65_C66AAAAA00900.09 AA00
665x6b_P_C66_C67AAAAA00770.20 AA00
675x6b_P_C67_C68AAAAA00240.43 AA00
685x6b_P_C68_G69AAwAA01730.17 AA01
695x6b_P_G69_G70AAwAA11850.34 AA11
705x6b_P_G70_C71AAwAA11760.32 AA11
715x6b_P_C71_U72NANNANT00.92 AA12
725x6b_P_U72_C73NANNANT00.47 IC04
735x6b_P_C73_C74NANNANT01.90 OP1S
745x6b_P_C74_A75NANNANT01.22 BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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