DNATCO v4.1: results

Crystal structure of SpyCas9-sgRNA-AcrIIA4 ternary complex

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5vw1_C_U11_U12	NAN	NANT	0	0.57	BA08
02	5vw1_C_U12_G13	AAA	AA08	65	0.32	AA08
03	5vw1_C_G13_U14	AAA	AA00	81	0.21	AA00
04	5vw1_C_U14_A15	AAA	AA09	10	0.49	AA09
05	5vw1_C_A15_A16	NAN	NANT	0	0.55	AA12
06	5vw1_C_A16_A17	AAA	AA00	69	0.21	AA00
07	5vw1_C_A17_A18	AAA	AA00	37	0.26	AA00
08	5vw1_C_A18_A19	AAA	AA00	88	0.16	AA00
09	5vw1_C_A19_A20	AAw	AA01	90	0.16	AA01
10	5vw1_C_A20_G21	AAA	AA00	63	0.41	AA00
11	5vw1_C_G21_U22	AAA	AA00	88	0.17	AA00
12	5vw1_C_U22_U23	AAA	AA00	78	0.20	AA00
13	5vw1_C_U23_U24	AAA	AA08	64	0.36	AA08
14	5vw1_C_U24_U25	AAA	AA00	71	0.20	AA00
15	5vw1_C_U25_A26	AAA	AA00	68	0.17	AA00
16	5vw1_C_A26_G27	AAw	AA01	28	0.33	AA01
17	5vw1_C_G27_A28	NAN	NANT	0	1.77	OP21
18	5vw1_C_A28_G29	NAN	NANT	0	2.06	OP06
19	5vw1_C_G29_C30	AAA	AA08	76	0.18	AA08
20	5vw1_C_C30_U31	AAA	AA00	92	0.14	AA00
21	5vw1_C_U31_A32	AAA	AA00	83	0.23	AA00
22	5vw1_C_A32_G33	AAA	AA00	72	0.20	AA00
23	5vw1_C_G33_A34	OPN	OP03	44	0.17	OP03
24	5vw1_C_A34_A35	AAw	AA11	71	0.28	AA11
25	5vw1_C_A35_A36	AAA	AA08	86	0.28	AA08
26	5vw1_C_A36_U37	NAN	NANT	0	0.88	AA08
27	5vw1_C_U37_A38	AAA	AA00	94	0.10	AA00
28	5vw1_C_A38_G39	AAA	AA00	93	0.10	AA00
29	5vw1_C_G39_C40	AAA	AA04	85	0.26	AA04
30	5vw1_C_C40_A41	AAA	AA08	83	0.21	AA08
31	5vw1_C_A41_A42	AAA	AA00	36	0.27	AA00
32	5vw1_C_A42_G43	NAN	NANT	0	0.56	AB02
33	5vw1_C_G43_U44	NAN	NANT	0	0.67	OP20
34	5vw1_C_U44_U45	OPN	OP11	35	0.55	OP11
35	5vw1_C_U45_A46	AAA	AA00	87	0.23	AA00
36	5vw1_C_A46_A47	AAA	AA08	75	0.22	AA08
37	5vw1_C_A47_A48	AAA	AA00	66	0.27	AA00
38	5vw1_C_A48_A49	AAA	AA00	80	0.15	AA00
39	5vw1_C_A49_U50	AAA	AA00	70	0.28	AA00
40	5vw1_C_U50_A51	NAN	NANT	0	1.58	OP02
41	5vw1_C_A51_A52	NAN	NANT	0	0.95	OPS1
42	5vw1_C_A52_G53	NAN	NANT	0	0.60	AA05
43	5vw1_C_G53_G54	AAA	AA00	51	0.27	AA00
44	5vw1_C_G54_C55	A-B	AB05	72	0.25	AB05
45	5vw1_C_C55_U56	NAN	NANT	0	1.60	BB00
46	5vw1_C_U56_A57	NAN	NANT	0	0.98	OP20
47	5vw1_C_A57_G58	NAN	NANT	0	0.53	ZZ02
48	5vw1_C_G58_U59	NAN	NANT	0	0.95	OP17
49	5vw1_C_U59_C60	NAN	NANT	0	0.48	OP06
50	5vw1_C_C60_C61	AAA	AA00	73	0.21	AA00
51	5vw1_C_C61_G62	AAA	AA00	61	0.20	AA00
52	5vw1_C_G62_U63	NAN	NANT	0	0.86	IC02
53	5vw1_C_U63_U64	OPN	OP11	77	0.39	OP11
54	5vw1_C_U64_A65	AAA	AA00	44	0.40	AA00
55	5vw1_C_A65_U66	AAA	AA00	22	0.44	AA00
56	5vw1_C_U66_C67	NAN	NANT	0	0.65	AA12
57	5vw1_C_C67_A68	NAN	NANT	0	1.38	OP17
58	5vw1_C_A68_A69	AAA	AA08	81	0.30	AA08
59	5vw1_C_A69_C70	AAA	AA00	81	0.20	AA00
60	5vw1_C_C70_U71	AAA	AA00	55	0.29	AA00
61	5vw1_C_U71_U72	AAA	AA00	66	0.24	AA00
62	5vw1_C_U72_G73	AAw	AA05	21	0.65	AA05
63	5vw1_C_G73_A74	NAN	NANT	0	0.32	OP03
64	5vw1_C_A74_A75	AAA	AA08	71	0.30	AA08
65	5vw1_C_A75_A76	NAN	NANT	0	1.01	IC04
66	5vw1_C_A76_A77	NAN	NANT	0	0.90	AAS1
67	5vw1_C_A77_A78	AAA	AA00	70	0.15	AA00
68	5vw1_C_A78_G79	AAw	AA06	75	0.20	AA06
69	5vw1_C_G79_U80	NAN	NANT	0	0.45	AA00
70	5vw1_C_U80_G81	NAN	NANT	0	0.59	AB05
71	5vw1_C_G81_U82	NAN	NANT	0	0.69	IC06
72	5vw1_C_U82_C83	NAN	NANT	0	1.09	OP13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible