DNATCO v4.1: results

Structure of Mycobacterium smegmatis transcription initiation complex with a full transcription bubble

Results of the assignment of 93 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5vi5_O_DG1_DC2	B-A	BA05	55	0.25	BA05
02	5vi5_O_DC2_DT3	A-B	AB01	29	0.39	AB01
03	5vi5_O_DT3_DT4	BBB	BB01	33	0.29	BB01
04	5vi5_O_DT4_DG5	NAN	NANT	0	0.29	BB10
05	5vi5_O_DG5_DA6	miB	BB10	52	0.44	BB10
06	5vi5_O_DA6_DC7	NAN	NANT	0	0.34	BB02
07	5vi5_O_DC7_DA8	BBB	BB00	52	0.39	BB00
08	5vi5_O_DA8_DA9	BBB	BB01	10	0.26	BB01
09	5vi5_O_DA9_DA10	BBB	BB01	31	0.29	BB01
10	5vi5_O_DA10_DA11	BBB	BB00	19	0.23	BB00
11	5vi5_O_DA11_DG12	NAN	NANT	0	0.60	BB02
12	5vi5_O_DG12_DT13	NAN	NANT	0	0.52	BB02
13	5vi5_O_DT13_DG14	B12	BB04	66	0.21	BB04
14	5vi5_O_DG14_DT15	miB	BB10	60	0.31	BB10
15	5vi5_O_DT15_DT16	BBB	BB00	65	0.27	BB00
16	5vi5_O_DT16_DA17	B12	BB04	46	0.26	BB04
17	5vi5_O_DA17_DA18	BBB	BB00	86	0.28	BB00
18	5vi5_O_DA18_DA19	B-A	BA08	80	0.21	BA08
19	5vi5_O_DA19_DT20	A-B	AB02	55	0.36	AB02
20	5vi5_O_DT20_DT21	BBB	BB01	55	0.20	BB01
21	5vi5_O_DT21_DG22	BBB	BB00	56	0.25	BB00
22	5vi5_O_DG22_DT23	BBB	BB00	86	0.19	BB00
23	5vi5_O_DT23_DG24	BBB	BB00	76	0.18	BB00
24	5vi5_O_DG24_DC25	BBB	BB01	64	0.21	BB01
25	5vi5_O_DC25_DT26	BBB	BB00	12	0.47	BB00
26	5vi5_O_DT26_DA27	NAN	NANT	0	0.33	OP20
27	5vi5_O_DA27_DT28	NAN	NANT	0	0.84	OP13
28	5vi5_O_DT28_DA29	BBw	BB16	74	0.36	BB16
29	5vi5_O_DA29_DC30	BBB	BB00	89	0.18	BB00
30	5vi5_O_DC30_DT31	NAN	NANT	0	1.16	IC03
31	5vi5_O_DT31_DG32	NAN	NANT	0	0.82	OP16
32	5vi5_O_DG32_DG33	NAN	NANT	0	1.60	IC03
33	5vi5_O_DG33_DG34	BBB	BB00	50	0.44	BB00
34	5vi5_O_DG34_DA35	NAN	NANT	0	0.65	BB10
35	5vi5_O_DA35_DG36	NAN	NANT	0	0.60	BB12
36	5vi5_O_DG36_DC37	NAN	NANT	0	1.07	IC07
37	5vi5_O_DC37_DC38	NAN	NANT	0	1.08	BB2S
38	5vi5_O_DC38_DG39	NAN	NANT	0	1.82	BBS1
39	5vi5_O_DG39_DT40	NAN	NANT	0	2.42	OP19
40	5vi5_O_DT40_DC41	NAN	NANT	0	0.92	BB02
41	5vi5_O_DC41_DA42	NAN	NANT	0	0.37	BB10
42	5vi5_O_DA42_DC43	BBB	BB00	82	0.27	BB00
43	5vi5_O_DC43_DG44	miB	BB10	83	0.24	BB10
44	5vi5_O_DG44_DG45	miB	BB10	66	0.26	BB10
45	5vi5_O_DG45_DA46	NAN	NANT	0	0.52	BA08
46	5vi5_O_DA46_DT47	NAN	NANT	0	0.34	AB03
47	5vi5_O_DT47_DG48	B12	BB04	48	0.34	BB04
48	5vi5_O_DG48_DC49	B12	BB04	71	0.21	BB04
49	5vi5_P_DG1_DC2	B12	BB04	87	0.21	BB04
50	5vi5_P_DC2_DA3	B12	BB04	86	0.20	BB04
51	5vi5_P_DA3_DT4	BB2	BB07	58	0.16	BB07
52	5vi5_P_DT4_DC5	BBB	BB00	53	0.28	BB00
53	5vi5_P_DC5_DC6	B12	BB04	38	0.35	BB04
54	5vi5_P_DC6_DG7	BBB	BB00	63	0.27	BB00
55	5vi5_P_DG7_DT8	BBB	BB00	57	0.34	BB00
56	5vi5_P_DT8_DG9	NAN	NANT	0	0.32	BB02
57	5vi5_P_DG9_DA10	NAN	NANT	0	0.39	BA05
58	5vi5_P_DA10_DG11	NAN	NANT	0	0.94	OP06
59	5vi5_P_DG11_DT12	AAA	AA00	23	0.41	AA00
60	5vi5_P_DT12_DC13	AAw	AA06	60	0.24	AA06
61	5vi5_P_DC13_DG14	NAN	NANT	0	0.42	AA10
62	5vi5_P_DG14_DA15	AAA	AA08	59	0.35	AA08
63	5vi5_P_DA15_DG16	AAw	AA06	31	0.50	AA06
64	5vi5_P_DG16_DG17	NAN	NANT	0	0.58	AA11
65	5vi5_P_DG17_DA18	NAN	NANT	0	1.52	IC04
66	5vi5_P_DA24_DG25	BBB	BB01	12	0.33	BB01
67	5vi5_P_DG25_DC26	BBB	BB01	42	0.29	BB01
68	5vi5_P_DC26_DA27	BBB	BB00	51	0.28	BB00
69	5vi5_P_DA27_DC28	BBB	BB00	16	0.24	BB00
70	5vi5_P_DC28_DA29	B12	BB04	74	0.16	BB04
71	5vi5_P_DA29_DA30	BBB	BB00	82	0.13	BB00
72	5vi5_P_DA30_DT31	BBB	BB00	85	0.17	BB00
73	5vi5_P_DT31_DT32	B12	BB04	15	0.26	BB04
74	5vi5_P_DT32_DT33	BBB	BB00	21	0.33	BB00
75	5vi5_P_DT33_DA34	B-A	BA01	16	0.20	BA01
76	5vi5_P_DA34_DA35	A-B	AB02	83	0.35	AB02
77	5vi5_P_DA35_DC36	BBB	BB00	79	0.29	BB00
78	5vi5_P_DC36_DA37	B12	BB04	31	0.19	BB04
79	5vi5_P_DA37_DC38	BBB	BB00	73	0.27	BB00
80	5vi5_P_DC38_DT39	BBB	BB00	57	0.40	BB00
81	5vi5_P_DT39_DT40	B12	BB04	61	0.19	BB04
82	5vi5_P_DT40_DT41	miB	BB10	32	0.34	BB10
83	5vi5_P_DT41_DT42	BBB	BB00	66	0.21	BB00
84	5vi5_P_DT42_DG43	BBB	BB00	56	0.37	BB00
85	5vi5_P_DG43_DT44	BBB	BB01	75	0.25	BB01
86	5vi5_P_DT44_DC45	NAN	NANT	0	0.45	AA02
87	5vi5_P_DC45_DA46	BBB	BB01	54	0.22	BB01
88	5vi5_P_DA46_DA47	BBB	BB01	52	0.18	BB01
89	5vi5_P_DA47_DG48	BBB	BB01	48	0.26	BB01
90	5vi5_P_DG48_DC49	miB	BB10	52	0.44	BB10
91	5vi5_Q_U1_C2	AAw	AA10	23	0.42	AA10
92	5vi5_Q_C2_G3	AAA	AA00	64	0.23	AA00
93	5vi5_Q_G3_A4	AAA	AA00	36	0.29	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 93 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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