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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
DHX36 in complex with the c-Myc G-quadruplex

Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015vhe_B_DA1_DG2NANNANT01.85 ZZS2
025vhe_B_DG2_DG3NANNANT00.52 BB03
035vhe_B_DG3_DG4A-BAB01330.30 AB01
045vhe_B_DG4_DT5NANNANT00.79 OP18
055vhe_B_DT5_DG6NANNANT00.92 OP30
065vhe_B_DG6_DG7NANNANT00.43 BB10
075vhe_B_DG7_DG8BBBBB01700.15 BB01
085vhe_B_DG8_DT9NANNANT02.09 OP06
095vhe_B_DT9_DA10NANNANT02.08 OP06
105vhe_B_DA10_DG11NANNANT00.80 BB13
115vhe_B_DG11_DG12BBwBB16160.67 BB16
125vhe_B_DG12_DG13NANNANT01.46 OP23
135vhe_B_DG13_DT14NANNANT01.50 OP09
145vhe_B_DT14_DG15SYNBBS1460.34 BBS1
155vhe_B_DG15_DG16B-ABA09170.45 BA09
165vhe_B_DG16_DG17NANNANT00.98 OP31
175vhe_B_DG17_DT18NANNANT01.06 OP10
185vhe_B_DT18_DT19NANNANT01.59 ZZS1
195vhe_B_DT19_DT20NANNANT01.31 OP28
205vhe_B_DT20_DT21NANNANT00.89 BB02
215vhe_B_DT21_DT22NANNANT00.54 BB05
225vhe_B_DT22_DT23NANNANT00.75 IC01
235vhe_B_DT23_DT24NANNANT00.51 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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