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Conformers: ABBIImiBZICOPNSYNN
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Glucocorticoid Receptor DNA Binding Domain - IL11 AP-1 recognition element Complex

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015va7_C_DA859_DG860B12BB04620.29 BB04
025va7_C_DG860_DG861B12BB04900.15 BB04
035va7_C_DG861_DG862BBBBB00760.24 BB00
045va7_C_DG862_DT863BBBBB00840.16 BB00
055va7_C_DT863_DG864BBBBB00680.30 BB00
065va7_C_DG864_DA865BBBBB00910.13 BB00
075va7_C_DA865_DG866B12BB04810.21 BB04
085va7_C_DG866_DT867BBBBB00720.14 BB00
095va7_C_DT867_DC868BBBBB01280.21 BB01
105va7_C_DC868_DA869BBBBB00210.28 BB00
115va7_C_DA869_DG870B12BB04670.22 BB04
125va7_C_DG870_DG871B12BB04690.17 BB04
135va7_C_DG871_DA872BBBBB00880.15 BB00
145va7_C_DA872_DT873BBBBB01740.24 BB01
155va7_C_DT873_DG874BBBBB00340.28 BB00
165va7_D_DC840_DA841A-BAB04400.38 AB04
175va7_D_DA841_DT842BBBBB00600.21 BB00
185va7_D_DT842_DC843BBBBB00600.19 BB00
195va7_D_DC843_DC844BBBBB00850.15 BB00
205va7_D_DC844_DT845BBBBB01610.13 BB01
215va7_D_DT845_DG846A-BAB03540.21 AB03
225va7_D_DG846_DA847B12BB04960.15 BB04
235va7_D_DA847_DC848BBBBB01870.13 BB01
245va7_D_DC848_DT849BBBBB01730.16 BB01
255va7_D_DT849_DC850BBBBB01240.23 BB01
265va7_D_DC850_DA851B-ABA08710.27 BA08
275va7_D_DA851_DC852A-BAB03510.27 AB03
285va7_D_DC852_DC853BBBBB00660.19 BB00
295va7_D_DC853_DC854BBBBB00730.18 BB00
305va7_D_DC854_DT855BBBBB00890.19 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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