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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
mouseZFP568-ZnF1-11 in complex with DNA

Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015v3m_A_DT1_DG2BBBBB00630.42 BB00
025v3m_A_DG2_DT3BBwBB02420.28 BB02
035v3m_A_DT3_DG4miBBB10320.46 BB10
045v3m_A_DG4_DG5NANNANT00.54 BB10
055v3m_A_DG5_DG6B12BB04270.28 BB04
065v3m_A_DG6_DC7BBBBB01470.46 BB01
075v3m_A_DC7_DG8BB2BB07120.30 BB07
085v3m_A_DG8_DT9BBBBB01200.26 BB01
095v3m_A_DT9_DG10BBBBB00460.43 BB00
105v3m_A_DG10_DG11BBBBB00490.35 BB00
115v3m_A_DG11_DC12BBBBB00730.29 BB00
125v3m_A_DC12_DA13BBBBB00240.46 BB00
135v3m_A_DA13_DC14B-ABA01260.32 BA01
145v3m_A_DC14_DA15A-BAB01620.25 AB01
155v3m_A_DA15_DG16BBBBB00880.21 BB00
165v3m_A_DG16_DG17B-ABA08910.23 BA08
175v3m_A_DG17_DT18A-BAB01710.24 AB01
185v3m_A_DT18_DA19BBBBB00660.27 BB00
195v3m_A_DA19_DA20BBBBB00770.24 BB00
205v3m_A_DA20_DA21B12BB04750.20 BB04
215v3m_A_DA21_DA22BBBBB00910.20 BB00
225v3m_A_DA22_DA23B12BB04910.15 BB04
235v3m_A_DA23_DG24BBBBB00790.25 BB00
245v3m_A_DG24_DG25BBBBB00870.19 BB00
255v3m_A_DG25_DG26BB2BB07500.36 BB07
265v3m_A_DG26_DC27BBBBB00800.13 BB00
275v3m_A_DC27_DA28BBBBB00830.27 BB00
285v3m_B_DT1_DG2BB2BB07460.41 BB07
295v3m_B_DG2_DC3BBBBB00650.23 BB00
305v3m_B_DC3_DC4BBBBB00790.38 BB00
315v3m_B_DC4_DC5B12BB04170.35 BB04
325v3m_B_DC5_DT6BBBBB00640.27 BB00
335v3m_B_DT6_DT7BBBBB01860.14 BB01
345v3m_B_DT7_DT8BBBBB00340.35 BB00
355v3m_B_DT8_DT9BBBBB01560.21 BB01
365v3m_B_DT9_DT10BBBBB01720.19 BB01
375v3m_B_DT10_DA11BBBBB00650.29 BB00
385v3m_B_DA11_DC12BBBBB01880.16 BB01
395v3m_B_DC12_DC13B-ABA05530.25 BA05
405v3m_B_DC13_DT14A-BAB03680.35 AB03
415v3m_B_DT14_DG15BBBBB00710.20 BB00
425v3m_B_DG15_DT16B-ABA08660.52 BA08
435v3m_B_DT16_DG17A-BAB03450.42 AB03
445v3m_B_DG17_DC18B-ABA05670.28 BA05
455v3m_B_DC18_DC19B-ABA05740.25 BA05
465v3m_B_DC19_DA20BBBBB01300.24 BB01
475v3m_B_DA20_DC21B-ABA10360.41 BA10
485v3m_B_DC21_DG22NANNANT00.55 AB03
495v3m_B_DG22_DC23B-ABA17650.26 BA17
505v3m_B_DC23_DC24BBBBB00300.33 BB00
515v3m_B_DC24_DC25B-ABA01470.19 BA01
525v3m_B_DC25_DA26A-BAB03720.42 AB03
535v3m_B_DA26_DC27BBBBB00640.37 BB00
545v3m_B_DC27_DA28NANNANT00.96 BB17

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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