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Conformers: ABBIImiBZICOPNSYNN
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Solution Structure of a DNA Dodecamer with 5-methylcytosine at the 3rd position and 8-oxoguanine at the 10th position

Results of the assignment of 264 detected steps in 12 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015uz1-m10_A_DC1_DG2BBBBB00240.54 BB00
0025uz1-m11_A_DC1_DG2BBBBB00290.49 BB00
0035uz1-m12_A_DC1_DG2BBBBB00260.33 BB00
0045uz1-m1_A_DC1_DG2BBBBB00310.49 BB00
0055uz1-m2_A_DC1_DG2BBBBB00260.51 BB00
0065uz1-m3_A_DC1_DG2BBBBB00680.25 BB00
0075uz1-m4_A_DC1_DG2BBBBB00280.53 BB00
0085uz1-m5_A_DC1_DG2BBBBB00240.53 BB00
0095uz1-m6_A_DC1_DG2BBBBB00740.27 BB00
0105uz1-m7_A_DC1_DG2BBBBB00250.51 BB00
0115uz1-m8_A_DC1_DG2BBBBB00290.49 BB00
0125uz1-m9_A_DC1_DG2BBBBB00290.49 BB00
0135uz1-m10_A_DG2_5CM3B-ABA05860.28 BA05
0145uz1-m11_A_DG2_5CM3B-ABA05860.28 BA05
0155uz1-m12_A_DG2_5CM3B-ABA05890.22 BA05
0165uz1-m1_A_DG2_5CM3B-ABA05850.27 BA05
0175uz1-m2_A_DG2_5CM3B-ABA05870.26 BA05
0185uz1-m3_A_DG2_5CM3B-ABA05860.26 BA05
0195uz1-m4_A_DG2_5CM3B-ABA05860.27 BA05
0205uz1-m5_A_DG2_5CM3B-ABA05870.25 BA05
0215uz1-m6_A_DG2_5CM3B-ABA05900.22 BA05
0225uz1-m7_A_DG2_5CM3B-ABA05870.27 BA05
0235uz1-m8_A_DG2_5CM3B-ABA05870.27 BA05
0245uz1-m9_A_DG2_5CM3B-ABA05860.26 BA05
0255uz1-m10_A_5CM3_DG4NANNANT00.53 AA02
0265uz1-m11_A_5CM3_DG4AAAAA02620.55 AA02
0275uz1-m12_A_5CM3_DG4NANNANT00.49 AA02
0285uz1-m1_A_5CM3_DG4NANNANT00.55 AA02
0295uz1-m2_A_5CM3_DG4NANNANT00.53 AA02
0305uz1-m3_A_5CM3_DG4AAAAA02500.56 AA02
0315uz1-m4_A_5CM3_DG4NANNANT00.52 AA02
0325uz1-m5_A_5CM3_DG4NANNANT00.51 AA02
0335uz1-m6_A_5CM3_DG4NANNANT00.50 AA02
0345uz1-m7_A_5CM3_DG4NANNANT00.53 AA02
0355uz1-m8_A_5CM3_DG4NANNANT00.53 AA02
0365uz1-m9_A_5CM3_DG4NANNANT00.52 AA02
0375uz1-m10_A_DG4_DA5BBBBB01410.29 BB01
0385uz1-m11_A_DG4_DA5BBBBB01430.31 BB01
0395uz1-m12_A_DG4_DA5BBBBB01510.27 BB01
0405uz1-m1_A_DG4_DA5BBBBB01450.30 BB01
0415uz1-m2_A_DG4_DA5BBBBB01420.30 BB01
0425uz1-m3_A_DG4_DA5BBBBB01450.31 BB01
0435uz1-m4_A_DG4_DA5BBBBB01470.29 BB01
0445uz1-m5_A_DG4_DA5BBBBB01440.30 BB01
0455uz1-m6_A_DG4_DA5BBBBB01520.27 BB01
0465uz1-m7_A_DG4_DA5BBBBB01430.30 BB01
0475uz1-m8_A_DG4_DA5BBBBB01430.31 BB01
0485uz1-m9_A_DG4_DA5BBBBB01600.27 BB01
0495uz1-m10_A_DA5_DA6BBBBB00820.31 BB00
0505uz1-m11_A_DA5_DA6BBBBB00820.27 BB00
0515uz1-m12_A_DA5_DA6BBBBB00820.30 BB00
0525uz1-m1_A_DA5_DA6BBBBB00820.27 BB00
0535uz1-m2_A_DA5_DA6BBBBB00830.27 BB00
0545uz1-m3_A_DA5_DA6BBBBB00820.27 BB00
0555uz1-m4_A_DA5_DA6BBBBB00820.26 BB00
0565uz1-m5_A_DA5_DA6BBBBB00830.28 BB00
0575uz1-m6_A_DA5_DA6BBBBB00820.30 BB00
0585uz1-m7_A_DA5_DA6BBBBB00830.28 BB00
0595uz1-m8_A_DA5_DA6BBBBB00830.27 BB00
0605uz1-m9_A_DA5_DA6BBBBB00820.27 BB00
0615uz1-m10_A_DA6_DT7B-ABA05820.28 BA05
0625uz1-m11_A_DA6_DT7B-ABA05820.27 BA05
0635uz1-m12_A_DA6_DT7B-ABA05820.28 BA05
0645uz1-m1_A_DA6_DT7B-ABA05830.28 BA05
0655uz1-m2_A_DA6_DT7B-ABA05830.26 BA05
0665uz1-m3_A_DA6_DT7B-ABA05820.28 BA05
0675uz1-m4_A_DA6_DT7B-ABA05830.27 BA05
0685uz1-m5_A_DA6_DT7B-ABA05820.28 BA05
0695uz1-m6_A_DA6_DT7B-ABA05820.27 BA05
0705uz1-m7_A_DA6_DT7B-ABA05820.28 BA05
0715uz1-m8_A_DA6_DT7B-ABA05820.28 BA05
0725uz1-m9_A_DA6_DT7B-ABA05840.27 BA05
0735uz1-m10_A_DT7_DT8NANNANT00.53 AA02
0745uz1-m11_A_DT7_DT8NANNANT00.53 AA02
0755uz1-m12_A_DT7_DT8NANNANT00.53 AA02
0765uz1-m1_A_DT7_DT8NANNANT00.53 AA02
0775uz1-m2_A_DT7_DT8NANNANT00.53 AA02
0785uz1-m3_A_DT7_DT8NANNANT00.54 AA02
0795uz1-m4_A_DT7_DT8NANNANT00.53 AA02
0805uz1-m5_A_DT7_DT8NANNANT00.53 AA02
0815uz1-m6_A_DT7_DT8NANNANT00.53 AA02
0825uz1-m7_A_DT7_DT8NANNANT00.53 AA02
0835uz1-m8_A_DT7_DT8NANNANT00.53 AA02
0845uz1-m9_A_DT7_DT8NANNANT00.54 AA02
0855uz1-m10_A_DT8_DC9BBBBB00290.26 BB00
0865uz1-m11_A_DT8_DC9BBBBB01410.28 BB01
0875uz1-m12_A_DT8_DC9BBBBB00300.26 BB00
0885uz1-m1_A_DT8_DC9BBBBB01440.26 BB01
0895uz1-m2_A_DT8_DC9BBBBB00220.27 BB00
0905uz1-m3_A_DT8_DC9BBBBB01390.27 BB01
0915uz1-m4_A_DT8_DC9BBBBB01430.27 BB01
0925uz1-m5_A_DT8_DC9BBBBB01440.27 BB01
0935uz1-m6_A_DT8_DC9BBBBB00260.27 BB00
0945uz1-m7_A_DT8_DC9BBBBB01420.26 BB01
0955uz1-m8_A_DT8_DC9BBBBB00270.26 BB00
0965uz1-m9_A_DT8_DC9BBBBB00220.27 BB00
0975uz1-m10_A_DC9_8OG10BBBBB00690.41 BB00
0985uz1-m11_A_DC9_8OG10BBBBB00730.38 BB00
0995uz1-m12_A_DC9_8OG10BBBBB00720.39 BB00
1005uz1-m1_A_DC9_8OG10BBBBB00710.40 BB00
1015uz1-m2_A_DC9_8OG10BBBBB00720.39 BB00
1025uz1-m3_A_DC9_8OG10BBBBB00700.41 BB00
1035uz1-m4_A_DC9_8OG10BBBBB00730.38 BB00
1045uz1-m5_A_DC9_8OG10BBBBB00720.39 BB00
1055uz1-m6_A_DC9_8OG10BBBBB00710.39 BB00
1065uz1-m7_A_DC9_8OG10BBBBB00720.39 BB00
1075uz1-m8_A_DC9_8OG10BBBBB00710.40 BB00
1085uz1-m9_A_DC9_8OG10BBBBB00700.41 BB00
1095uz1-m10_A_8OG10_DC11BB2BB07510.28 BB07
1105uz1-m11_A_8OG10_DC11BB2BB07540.32 BB07
1115uz1-m12_A_8OG10_DC11BB2BB07530.28 BB07
1125uz1-m1_A_8OG10_DC11BB2BB07530.29 BB07
1135uz1-m2_A_8OG10_DC11BB2BB07530.32 BB07
1145uz1-m3_A_8OG10_DC11BB2BB07530.28 BB07
1155uz1-m4_A_8OG10_DC11BB2BB07540.33 BB07
1165uz1-m5_A_8OG10_DC11BB2BB07540.31 BB07
1175uz1-m6_A_8OG10_DC11BB2BB07520.28 BB07
1185uz1-m7_A_8OG10_DC11BB2BB07540.33 BB07
1195uz1-m8_A_8OG10_DC11BB2BB07530.29 BB07
1205uz1-m9_A_8OG10_DC11BB2BB07520.28 BB07
1215uz1-m10_A_DC11_DG12BBBBB00830.21 BB00
1225uz1-m11_A_DC11_DG12BBBBB00800.26 BB00
1235uz1-m12_A_DC11_DG12BBBBB00840.20 BB00
1245uz1-m1_A_DC11_DG12BBBBB00830.21 BB00
1255uz1-m2_A_DC11_DG12BBBBB00790.27 BB00
1265uz1-m3_A_DC11_DG12BBBBB00840.20 BB00
1275uz1-m4_A_DC11_DG12BBBBB00790.27 BB00
1285uz1-m5_A_DC11_DG12BBBBB00820.23 BB00
1295uz1-m6_A_DC11_DG12BBBBB00840.20 BB00
1305uz1-m7_A_DC11_DG12BBBBB00800.27 BB00
1315uz1-m8_A_DC11_DG12BBBBB00840.20 BB00
1325uz1-m9_A_DC11_DG12BBBBB00820.21 BB00
1335uz1-m10_B_DC13_DG14BBBBB00260.51 BB00
1345uz1-m11_B_DC13_DG14BBBBB00760.25 BB00
1355uz1-m12_B_DC13_DG14BBBBB00230.54 BB00
1365uz1-m1_B_DC13_DG14BBBBB00320.49 BB00
1375uz1-m2_B_DC13_DG14BBBBB00740.27 BB00
1385uz1-m3_B_DC13_DG14BBBBB00250.53 BB00
1395uz1-m4_B_DC13_DG14BBBBB00710.27 BB00
1405uz1-m5_B_DC13_DG14BBBBB00360.35 BB00
1415uz1-m6_B_DC13_DG14BBBBB00270.49 BB00
1425uz1-m7_B_DC13_DG14BBBBB00770.23 BB00
1435uz1-m8_B_DC13_DG14BBBBB00250.54 BB00
1445uz1-m9_B_DC13_DG14BBBBB00270.50 BB00
1455uz1-m10_B_DG14_5CM15B-ABA05870.24 BA05
1465uz1-m11_B_DG14_5CM15B-ABA05890.22 BA05
1475uz1-m12_B_DG14_5CM15B-ABA05860.25 BA05
1485uz1-m1_B_DG14_5CM15B-ABA05840.25 BA05
1495uz1-m2_B_DG14_5CM15B-ABA05890.21 BA05
1505uz1-m3_B_DG14_5CM15B-ABA05870.26 BA05
1515uz1-m4_B_DG14_5CM15B-ABA05900.24 BA05
1525uz1-m5_B_DG14_5CM15B-ABA05880.22 BA05
1535uz1-m6_B_DG14_5CM15B-ABA05860.24 BA05
1545uz1-m7_B_DG14_5CM15B-ABA05910.22 BA05
1555uz1-m8_B_DG14_5CM15B-ABA05860.25 BA05
1565uz1-m9_B_DG14_5CM15B-ABA05860.25 BA05
1575uz1-m10_B_5CM15_DG16AAAAA02650.51 AA02
1585uz1-m11_B_5CM15_DG16NANNANT00.49 AA02
1595uz1-m12_B_5CM15_DG16NANNANT00.49 AA02
1605uz1-m1_B_5CM15_DG16AAAAA02660.50 AA02
1615uz1-m2_B_5CM15_DG16NANNANT00.48 AA02
1625uz1-m3_B_5CM15_DG16AAAAA02640.53 AA02
1635uz1-m4_B_5CM15_DG16AAAAA02670.51 AA02
1645uz1-m5_B_5CM15_DG16NANNANT00.50 AA02
1655uz1-m6_B_5CM15_DG16NANNANT00.50 AA02
1665uz1-m7_B_5CM15_DG16AAAAA02680.51 AA02
1675uz1-m8_B_5CM15_DG16AAAAA02650.51 AA02
1685uz1-m9_B_5CM15_DG16NANNANT00.51 AA02
1695uz1-m10_B_DG16_DA17BBBBB01280.31 BB01
1705uz1-m11_B_DG16_DA17BBBBB01270.30 BB01
1715uz1-m12_B_DG16_DA17BBBBB01260.32 BB01
1725uz1-m1_B_DG16_DA17BBBBB01240.32 BB01
1735uz1-m2_B_DG16_DA17BBBBB01270.29 BB01
1745uz1-m3_B_DG16_DA17BBBBB01250.33 BB01
1755uz1-m4_B_DG16_DA17BBBBB01220.33 BB01
1765uz1-m5_B_DG16_DA17BBBBB01270.32 BB01
1775uz1-m6_B_DG16_DA17BBBBB01280.30 BB01
1785uz1-m7_B_DG16_DA17BBBBB01230.33 BB01
1795uz1-m8_B_DG16_DA17BBBBB01240.32 BB01
1805uz1-m9_B_DG16_DA17BBBBB01370.28 BB01
1815uz1-m10_B_DA17_DA18B-ABA05770.18 BA05
1825uz1-m11_B_DA17_DA18B-ABA05760.18 BA05
1835uz1-m12_B_DA17_DA18B-ABA05760.19 BA05
1845uz1-m1_B_DA17_DA18B-ABA05740.20 BA05
1855uz1-m2_B_DA17_DA18B-ABA05760.18 BA05
1865uz1-m3_B_DA17_DA18B-ABA05770.18 BA05
1875uz1-m4_B_DA17_DA18B-ABA05760.19 BA05
1885uz1-m5_B_DA17_DA18B-ABA05760.18 BA05
1895uz1-m6_B_DA17_DA18B-ABA05760.18 BA05
1905uz1-m7_B_DA17_DA18B-ABA05770.19 BA05
1915uz1-m8_B_DA17_DA18B-ABA05760.19 BA05
1925uz1-m9_B_DA17_DA18B-ABA05770.17 BA05
1935uz1-m10_B_DA18_DT19BBBBB01140.47 BB01
1945uz1-m11_B_DA18_DT19BBBBB01120.48 BB01
1955uz1-m12_B_DA18_DT19B-ABA05130.58 BA05
1965uz1-m1_B_DA18_DT19B-ABA05120.59 BA05
1975uz1-m2_B_DA18_DT19B-ABA05130.58 BA05
1985uz1-m3_B_DA18_DT19BBBBB01130.48 BB01
1995uz1-m4_B_DA18_DT19B-ABA05110.59 BA05
2005uz1-m5_B_DA18_DT19BBBBB01140.48 BB01
2015uz1-m6_B_DA18_DT19B-ABA05140.57 BA05
2025uz1-m7_B_DA18_DT19B-ABA05110.59 BA05
2035uz1-m8_B_DA18_DT19BBBBB01140.48 BB01
2045uz1-m9_B_DA18_DT19BBBBB01130.48 BB01
2055uz1-m10_B_DT19_DT20BBBBB01340.26 BB01
2065uz1-m11_B_DT19_DT20BBBBB01320.26 BB01
2075uz1-m12_B_DT19_DT20BBBBB01330.26 BB01
2085uz1-m1_B_DT19_DT20BBBBB01330.25 BB01
2095uz1-m2_B_DT19_DT20BBBBB01320.26 BB01
2105uz1-m3_B_DT19_DT20BBBBB01360.25 BB01
2115uz1-m4_B_DT19_DT20BBBBB01350.24 BB01
2125uz1-m5_B_DT19_DT20BBBBB01390.25 BB01
2135uz1-m6_B_DT19_DT20BBBBB01300.26 BB01
2145uz1-m7_B_DT19_DT20BBBBB01350.25 BB01
2155uz1-m8_B_DT19_DT20BBBBB01350.25 BB01
2165uz1-m9_B_DT19_DT20BBBBB01360.25 BB01
2175uz1-m10_B_DT20_DC21BBBBB01490.25 BB01
2185uz1-m11_B_DT20_DC21BBBBB01490.25 BB01
2195uz1-m12_B_DT20_DC21BBBBB01500.25 BB01
2205uz1-m1_B_DT20_DC21BBBBB01530.24 BB01
2215uz1-m2_B_DT20_DC21BBBBB01470.25 BB01
2225uz1-m3_B_DT20_DC21BBBBB01510.25 BB01
2235uz1-m4_B_DT20_DC21BBBBB01460.24 BB01
2245uz1-m5_B_DT20_DC21BBBBB01460.25 BB01
2255uz1-m6_B_DT20_DC21BBBBB01510.25 BB01
2265uz1-m7_B_DT20_DC21BBBBB01510.24 BB01
2275uz1-m8_B_DT20_DC21BBBBB01500.25 BB01
2285uz1-m9_B_DT20_DC21BBBBB01440.25 BB01
2295uz1-m10_B_DC21_8OG22BBBBB00710.41 BB00
2305uz1-m11_B_DC21_8OG22BBBBB00710.41 BB00
2315uz1-m12_B_DC21_8OG22BBBBB00730.40 BB00
2325uz1-m1_B_DC21_8OG22BBBBB00700.42 BB00
2335uz1-m2_B_DC21_8OG22BBBBB00710.40 BB00
2345uz1-m3_B_DC21_8OG22BBBBB00700.41 BB00
2355uz1-m4_B_DC21_8OG22BBBBB00720.41 BB00
2365uz1-m5_B_DC21_8OG22BBBBB00720.41 BB00
2375uz1-m6_B_DC21_8OG22BBBBB00720.41 BB00
2385uz1-m7_B_DC21_8OG22BBBBB00710.40 BB00
2395uz1-m8_B_DC21_8OG22BBBBB00710.41 BB00
2405uz1-m9_B_DC21_8OG22BBBBB00700.41 BB00
2415uz1-m10_B_8OG22_DC23BB2BB07530.28 BB07
2425uz1-m11_B_8OG22_DC23BB2BB07530.27 BB07
2435uz1-m12_B_8OG22_DC23BB2BB07520.32 BB07
2445uz1-m1_B_8OG22_DC23BB2BB07520.29 BB07
2455uz1-m2_B_8OG22_DC23BB2BB07530.28 BB07
2465uz1-m3_B_8OG22_DC23BB2BB07520.32 BB07
2475uz1-m4_B_8OG22_DC23BB2BB07540.28 BB07
2485uz1-m5_B_8OG22_DC23BB2BB07530.27 BB07
2495uz1-m6_B_8OG22_DC23BB2BB07500.32 BB07
2505uz1-m7_B_8OG22_DC23BB2BB07530.28 BB07
2515uz1-m8_B_8OG22_DC23BB2BB07530.28 BB07
2525uz1-m9_B_8OG22_DC23BB2BB07510.28 BB07
2535uz1-m10_B_DC23_DG24BBBBB00830.20 BB00
2545uz1-m11_B_DC23_DG24BBBBB00830.20 BB00
2555uz1-m12_B_DC23_DG24BBBBB00780.27 BB00
2565uz1-m1_B_DC23_DG24BBBBB00840.20 BB00
2575uz1-m2_B_DC23_DG24BBBBB00840.20 BB00
2585uz1-m3_B_DC23_DG24BBBBB00750.30 BB00
2595uz1-m4_B_DC23_DG24BBBBB00850.20 BB00
2605uz1-m5_B_DC23_DG24BBBBB00830.22 BB00
2615uz1-m6_B_DC23_DG24BBBBB00760.28 BB00
2625uz1-m7_B_DC23_DG24BBBBB00830.21 BB00
2635uz1-m8_B_DC23_DG24BBBBB00830.21 BB00
2645uz1-m9_B_DC23_DG24BBBBB00830.21 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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