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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of Mycobacterium tuberculosis transcription initiation complex in complex with Rifampin

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015uhb_H_DT1_DA2NANNANT00.88 IC05
025uhb_H_DA2_DT3NANNANT01.11 OP14
035uhb_H_DT3_DA4BBBBB00330.62 BB00
045uhb_H_DA4_DA5BBBBB00670.20 BB00
055uhb_H_DA5_DT6NANNANT00.63 OP20
065uhb_H_DT6_DG7NANNANT01.53 OP30
075uhb_H_DG7_DG8NANNANT01.27 OP22
085uhb_H_DG8_DG9BBBBB00810.27 BB00
095uhb_H_DG9_DA10B12BB04510.44 BB04
105uhb_H_DA10_DG11miBBB13280.47 BB13
115uhb_H_DG11_DC12NANNANT01.64 BB03
125uhb_H_DC12_DT13NANNANT00.93 BB12
135uhb_H_DT13_DG14NANNANT01.39 OP20
145uhb_H_DG14_DT15NANNANT01.02 OP16
155uhb_H_DT15_DC16NANNANT00.66 BB02
165uhb_H_DC16_DA17miBBB10650.25 BB10
175uhb_H_DA17_DC18BBBBB01660.23 BB01
185uhb_H_DC18_DG19BBBBB00380.35 BB00
195uhb_H_DG19_DG20BBBBB00430.29 BB00
205uhb_H_DG20_DA21B12BB04880.17 BB04
215uhb_H_DA21_DT22BBBBB00580.32 BB00
225uhb_H_DT22_DG23BBBBB00540.38 BB00
235uhb_G_DC5_DA6BBwBB03540.38 BB03
245uhb_G_DA6_DT7BBwBB03320.51 BB03
255uhb_G_DT7_DC8NANNANT00.42 BB17
265uhb_G_DC8_DC9BBBBB00830.22 BB00
275uhb_G_DC9_DG10BBBBB00890.18 BB00
285uhb_G_DG10_DT11BBBBB00750.26 BB00
295uhb_G_DT11_DG12NANNANT00.50 BA09
305uhb_G_DG12_DA13AAAAA08380.43 AA08
315uhb_G_DA13_DG14NANNANT00.80 OP06
325uhb_G_DG14_DT15AAAAA00260.33 AA00
335uhb_G_DT15_DC16AAAAA08800.26 AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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