Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5uh8_H_DT1_DA2 | NAN | NANT | 0 | 0.83 |
| 02 | 5uh8_H_DA2_DT3 | NAN | NANT | 0 | 0.92 |
| 03 | 5uh8_H_DT3_DA4 | BBw | BB16 | 66 | 0.27 |
| 04 | 5uh8_H_DA4_DA5 | BBB | BB00 | 62 | 0.18 |
| 05 | 5uh8_H_DA5_DT6 | OPN | OP20 | 42 | 0.61 |
| 06 | 5uh8_H_DT6_DG7 | NAN | NANT | 0 | 1.31 |
| 07 | 5uh8_H_DG7_DG8 | NAN | NANT | 0 | 1.24 |
| 08 | 5uh8_H_DG8_DG9 | BBB | BB00 | 68 | 0.27 |
| 09 | 5uh8_H_DG9_DA10 | B12 | BB04 | 65 | 0.41 |
| 10 | 5uh8_H_DA10_DG11 | miB | BB12 | 13 | 0.38 |
| 11 | 5uh8_H_DG11_DC12 | NAN | NANT | 0 | 1.65 |
| 12 | 5uh8_H_DC12_DT13 | NAN | NANT | 0 | 0.94 |
| 13 | 5uh8_H_DT13_DG14 | NAN | NANT | 0 | 1.65 |
| 14 | 5uh8_H_DG14_DT15 | NAN | NANT | 0 | 1.02 |
| 15 | 5uh8_H_DT15_DC16 | NAN | NANT | 0 | 0.64 |
| 16 | 5uh8_H_DC16_DA17 | miB | BB10 | 56 | 0.22 |
| 17 | 5uh8_H_DA17_DC18 | BBB | BB01 | 72 | 0.25 |
| 18 | 5uh8_H_DC18_DG19 | BBB | BB00 | 52 | 0.33 |
| 19 | 5uh8_H_DG19_DG20 | BBB | BB00 | 64 | 0.26 |
| 20 | 5uh8_H_DG20_DA21 | B12 | BB04 | 87 | 0.19 |
| 21 | 5uh8_H_DA21_DT22 | BBB | BB00 | 54 | 0.36 |
| 22 | 5uh8_H_DT22_DG23 | BBB | BB00 | 51 | 0.34 |
| 23 | 5uh8_G_DC5_DA6 | BBw | BB03 | 62 | 0.33 |
| 24 | 5uh8_G_DA6_DT7 | BBw | BB03 | 32 | 0.51 |
| 25 | 5uh8_G_DT7_DC8 | NAN | NANT | 0 | 0.54 |
| 26 | 5uh8_G_DC8_DC9 | BBB | BB00 | 80 | 0.20 |
| 27 | 5uh8_G_DC9_DG10 | BBB | BB00 | 96 | 0.11 |
| 28 | 5uh8_G_DG10_DT11 | BBB | BB00 | 77 | 0.28 |
| 29 | 5uh8_G_DT11_DG12 | NAN | NANT | 0 | 0.77 |
| 30 | 5uh8_G_DG12_DA13 | AAA | AA08 | 34 | 0.33 |
| 31 | 5uh8_G_DA13_DG14 | NAN | NANT | 0 | 0.82 |
| 32 | 5uh8_G_DG14_DT15 | AAA | AA00 | 47 | 0.31 |
| 33 | 5uh8_G_DT15_DC16 | AAA | AA00 | 79 | 0.19 |
| 34 | 5uh8_G_DC16_DG17 | AAA | AA00 | 47 | 0.22 |
| 35 | 5uh8_G_DG17_DA18 | AAA | AA08 | 76 | 0.15 |
| 36 | 5uh8_G_DA18_DG19 | NAN | NANT | 0 | 0.47 |
| 37 | 5uh8_G_DG19_DG20 | NAN | NANT | 0 | 0.39 |
| 38 | 5uh8_I_U1_C2 | AAA | AA00 | 84 | 0.17 |
| 39 | 5uh8_I_C2_G3 | AAA | AA00 | 73 | 0.22 |
| 40 | 5uh8_I_G3_A4 | AAA | AA00 | 69 | 0.19 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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