Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structural insights into IL-1 alpha recognition by a naphthyl-modified aptamer that mimics IL-1RI Domain III
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5uc6_B_DC1_DG2 | ZZZ | ZZ1S | 75 | 0.17 |
| 02 | 5uc6_B_DG2_85Y3 | NAN | NANT | 0 | 0.81 |
| 03 | 5uc6_B_85Y3_DG4 | BBB | BB00 | 17 | 0.56 |
| 04 | 5uc6_B_DG4_DA5 | NAN | NANT | 0 | 1.73 |
| 05 | 5uc6_B_DA5_DG6 | NAN | NANT | 0 | 0.50 |
| 06 | 5uc6_B_DG6_85Y7 | NAN | NANT | 0 | 1.78 |
| 07 | 5uc6_B_85Y7_85Y8 | NAN | NANT | 0 | 0.76 |
| 08 | 5uc6_B_85Y8_DA9 | ZZZ | ZZ1S | 20 | 0.27 |
| 09 | 5uc6_B_DA9_85Y10 | NAN | NANT | 0 | 0.68 |
| 10 | 5uc6_B_85Y10_DG11 | NAN | NANT | 0 | 0.80 |
| 11 | 5uc6_B_DG11_DG12 | NAN | NANT | 0 | 0.62 |
| 12 | 5uc6_B_DG12_DG13 | A-B | AB01 | 66 | 0.29 |
| 13 | 5uc6_B_DG13_85Y14 | NAN | NANT | 0 | 0.70 |
| 14 | 5uc6_B_85Y14_85Y15 | NAN | NANT | 0 | 0.95 |
| 15 | 5uc6_B_85Y15_DA16 | ZZZ | ZZ2S | 54 | 0.28 |
| 16 | 5uc6_B_DA16_DG17 | SYN | BBS1 | 79 | 0.28 |
| 17 | 5uc6_B_DG17_DA18 | OPN | OP15 | 57 | 0.46 |
| 18 | 5uc6_B_DA18_DG19 | NAN | NANT | 0 | 1.87 |
| 19 | 5uc6_B_DG19_85Y20 | NAN | NANT | 0 | 0.58 |
| 20 | 5uc6_B_85Y20_DC21 | NAN | NANT | 0 | 1.23 |
| 21 | 5uc6_B_DC21_DG22 | NAN | NANT | 0 | 0.21 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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