DNATCO v4.1: results

SUMO2 bound to Mouse Tdp2 catalytic domain with a 5'-phosphorylated DNA ternary complex

Results of the assignment of 64 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5tvp_J_DC2_DC3	NAN	NANT	0	0.77	OP22
02	5tvp_J_DC3_DG4	BBB	BB00	55	0.54	BB00
03	5tvp_J_DG4_DA5	BB2	BB07	93	0.20	BB07
04	5tvp_J_DA5_DA6	BBB	BB00	85	0.19	BB00
05	5tvp_J_DA6_DT7	B-A	BA05	86	0.24	BA05
06	5tvp_J_DT7_DT8	A-B	AB01	10	0.39	AB01
07	5tvp_J_DT8_DC9	miB	BB15	55	0.38	BB15
08	5tvp_J_DC9_DG10	BB2	BB07	59	0.33	BB07
09	5tvp_P_DC2_DC3	NAN	NANT	0	0.76	OP22
10	5tvp_P_DC3_DG4	BBB	BB00	52	0.53	BB00
11	5tvp_P_DG4_DA5	BB2	BB07	79	0.29	BB07
12	5tvp_P_DA5_DA6	BBB	BB01	92	0.13	BB01
13	5tvp_P_DA6_DT7	B-A	BA05	63	0.26	BA05
14	5tvp_P_DT7_DT8	A-B	AB01	23	0.45	AB01
15	5tvp_P_DT8_DC9	miB	BB15	52	0.39	BB15
16	5tvp_P_DC9_DG10	BB2	BB07	64	0.23	BB07
17	5tvp_F_DC2_DC3	NAN	NANT	0	0.75	OP22
18	5tvp_F_DC3_DG4	BBB	BB00	55	0.52	BB00
19	5tvp_F_DG4_DA5	BB2	BB07	72	0.30	BB07
20	5tvp_F_DA5_DA6	BBB	BB00	93	0.12	BB00
21	5tvp_F_DA6_DT7	B-A	BA05	83	0.28	BA05
22	5tvp_F_DT7_DT8	BBB	BB01	44	0.18	BB01
23	5tvp_F_DT8_DC9	BBB	BB00	29	0.37	BB00
24	5tvp_F_DC9_DG10	BB2	BB07	60	0.25	BB07
25	5tvp_H_DC2_DC3	OPN	OP22	22	0.70	OP22
26	5tvp_H_DC3_DG4	BBB	BB00	58	0.53	BB00
27	5tvp_H_DG4_DA5	BB2	BB07	60	0.26	BB07
28	5tvp_H_DA5_DA6	BBB	BB01	89	0.12	BB01
29	5tvp_H_DA6_DT7	B-A	BA05	13	0.29	BA05
30	5tvp_H_DT7_DT8	BBB	BB01	11	0.28	BB01
31	5tvp_H_DT8_DC9	BBB	BB00	33	0.24	BB00
32	5tvp_H_DC9_DG10	B12	BB04	67	0.25	BB04
33	5tvp_C_DC2_DC3	NAN	NANT	0	0.75	OP22
34	5tvp_C_DC3_DG4	BBB	BB00	42	0.51	BB00
35	5tvp_C_DG4_DA5	BB2	BB07	76	0.22	BB07
36	5tvp_C_DA5_DA6	BBB	BB00	85	0.15	BB00
37	5tvp_C_DA6_DT7	B-A	BA05	57	0.24	BA05
38	5tvp_C_DT7_DT8	A-B	AB03	88	0.27	AB03
39	5tvp_C_DT8_DC9	BBB	BB00	25	0.32	BB00
40	5tvp_C_DC9_DG10	BB2	BB07	68	0.26	BB07
41	5tvp_D_DC2_DC3	NAN	NANT	0	0.77	OP22
42	5tvp_D_DC3_DG4	BBB	BB00	40	0.52	BB00
43	5tvp_D_DG4_DA5	BB2	BB07	74	0.30	BB07
44	5tvp_D_DA5_DA6	BBB	BB00	91	0.10	BB00
45	5tvp_D_DA6_DT7	B-A	BA05	22	0.29	BA05
46	5tvp_D_DT7_DT8	A-B	AB01	47	0.40	AB01
47	5tvp_D_DT8_DC9	BBB	BB00	28	0.28	BB00
48	5tvp_D_DC9_DG10	BB2	BB07	67	0.29	BB07
49	5tvp_L_DC2_DC3	NAN	NANT	0	0.74	OP22
50	5tvp_L_DC3_DG4	BBB	BB00	48	0.52	BB00
51	5tvp_L_DG4_DA5	BB2	BB07	73	0.18	BB07
52	5tvp_L_DA5_DA6	BBB	BB00	78	0.12	BB00
53	5tvp_L_DA6_DT7	B-A	BA01	47	0.14	BA01
54	5tvp_L_DT7_DT8	A-B	AB01	31	0.27	AB01
55	5tvp_L_DT8_DC9	BBB	BB00	18	0.29	BB00
56	5tvp_L_DC9_DG10	BB2	BB07	73	0.30	BB07
57	5tvp_N_DC2_DC3	NAN	NANT	0	0.81	OP22
58	5tvp_N_DC3_DG4	BBB	BB00	66	0.46	BB00
59	5tvp_N_DG4_DA5	NAN	NANT	0	0.36	BB08
60	5tvp_N_DA5_DA6	BBB	BB01	67	0.36	BB01
61	5tvp_N_DA6_DT7	B-A	BA01	56	0.18	BA01
62	5tvp_N_DT7_DT8	A-B	AB01	11	0.38	AB01
63	5tvp_N_DT8_DC9	miB	BB15	53	0.37	BB15
64	5tvp_N_DC9_DG10	B12	BB04	71	0.28	BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

Browse conformers

Show

Color by conformation group (pyramids)

Color by NtC (balls)

A

A-B

B-A

IC

OPN

Z

N

Results of the assignment of 64 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Download

Restraints

User-based restraints

Definitions

Download the papers

Browse conformers

Show

group
visible