DNATCO v4.1: results

Crystal Structure of the Twister Sister (TS) Ribozyme at 2.0 Angstrom

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5t5a_A_G1_C2	AAA	AA00	30	0.14	AA00
02	5t5a_A_C2_A3	AAA	AA00	93	0.10	AA00
03	5t5a_A_A3_G4	AAA	AA08	94	0.19	AA08
04	5t5a_A_G4_G5	AAA	AA00	85	0.19	AA00
05	5t5a_A_G5_G6	AAA	AA00	61	0.35	AA00
06	5t5a_A_G6_C7	AAA	AA00	69	0.29	AA00
07	5t5a_A_C7_A8	NAN	NANT	0	0.96	OP09
08	5t5a_A_A8_A9	OPN	OP12	59	0.29	OP12
09	5t5a_A_A9_G10	AAA	AA08	65	0.26	AA08
10	5t5a_A_G10_G11	AAA	AA00	29	0.31	AA00
11	5t5a_A_G11_C12	AAA	AA00	83	0.12	AA00
12	5t5a_A_C12_C13	AAA	AA00	78	0.16	AA00
13	5t5a_A_C13_C14	AAA	AA00	94	0.23	AA00
14	5t5a_A_C14_A15	AAA	AA00	91	0.21	AA00
15	5t5a_A_A15_G16	NAN	NANT	0	0.82	OP09
16	5t5a_A_G16_U17	NAN	NANT	0	0.46	BA08
17	5t5a_A_U17_C18	NAN	NANT	0	0.32	AA03
18	5t5a_A_C18_C19	AAA	AA00	84	0.20	AA00
19	5t5a_A_C19_C20	AAA	AA00	72	0.22	AA00
20	5t5a_A_C20_G21	AAA	AA00	84	0.19	AA00
21	5t5a_A_G21_U22	AAA	AA00	94	0.14	AA00
22	5t5a_A_U22_G23	AAA	AA08	80	0.35	AA08
23	5t5a_A_G23_C24	OPN	OP04	83	0.25	OP04
24	5t5a_A_C24_A25	AAA	AA08	51	0.36	AA08
25	5t5a_A_A25_A26	NAN	NANT	0	0.48	IC01
26	5t5a_A_A26_G27	NAN	NANT	0	1.04	OP04
27	5t5a_A_G27_C28	NAN	NANT	0	0.75	AB05
28	5t5a_A_C28_C29	OPN	OP12	35	0.57	OP12
29	5t5a_A_C29_G30	AAA	AA00	74	0.23	AA00
30	5t5a_A_G30_G31	AAA	AA00	76	0.15	AA00
31	5t5a_A_G31_G32	AAA	AA00	73	0.20	AA00
32	5t5a_A_G32_A33	AAA	AA00	65	0.28	AA00
33	5t5a_A_A33_C34	AAA	AA08	88	0.19	AA08
34	5t5a_A_C34_C35	AAA	AA00	73	0.25	AA00
35	5t5a_A_C35_G36	AAw	AA01	52	0.21	AA01
36	5t5a_A_G41_G42	AAA	AA00	68	0.22	AA00
37	5t5a_A_G42_G43	AAA	AA00	78	0.19	AA00
38	5t5a_A_G43_G44	AAA	AA00	78	0.18	AA00
39	5t5a_A_G44_C45	AAA	AA00	64	0.26	AA00
40	5t5a_A_C45_G46	A-B	AB05	70	0.23	AB05
41	5t5a_A_G46_C47	NAN	NANT	0	1.16	OP04
42	5t5a_A_C47_G48	NAN	NANT	0	0.76	OP27
43	5t5a_A_G48_G49	AAw	AA01	82	0.15	AA01
44	5t5a_A_G49_C50	AAA	AA00	62	0.33	AA00
45	5t5a_A_C50_G51	A-B	AB05	69	0.52	AB05
46	5t5a_A_G51_C52	NAN	NANT	0	0.42	OP26
47	5t5a_A_C52_U53	AAA	AA00	70	0.24	AA00
48	5t5a_A_U53_DC54	AAA	AA00	54	0.24	AA00
49	5t5a_A_DC54_A55	A-B	AB05	17	0.39	AB05
50	5t5a_A_A55_U56	NAN	NANT	0	2.20	BB08
51	5t5a_A_U56_U57	NAN	NANT	0	0.62	OP01
52	5t5a_A_U57_C58	AAA	AA00	52	0.29	AA00
53	5t5a_A_C58_C59	AAA	AA00	70	0.23	AA00
54	5t5a_A_C59_U60	AAA	AA00	96	0.10	AA00
55	5t5a_A_U60_G61	AAA	AA04	89	0.15	AA04
56	5t5a_A_G61_C62	AAA	AA00	90	0.17	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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