Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5nz6_A_G3_G4 | AAA | AA08 | 81 | 0.20 |
| 02 | 5nz6_A_G4_A5 | NAN | NANT | 0 | 0.58 |
| 03 | 5nz6_A_A5_C6 | NAN | NANT | 0 | 0.64 |
| 04 | 5nz6_A_C6_G7 | B-A | BA08 | 16 | 0.52 |
| 05 | 5nz6_A_G7_A8 | AAA | AA00 | 77 | 0.21 |
| 06 | 5nz6_A_A8_G9 | AAA | AA00 | 78 | 0.20 |
| 07 | 5nz6_A_G9_G10 | AAA | AA08 | 77 | 0.22 |
| 08 | 5nz6_A_G10_U11 | ZZZ | ZZ01 | 10 | 0.36 |
| 09 | 5nz6_A_U11_G12 | NAN | NANT | 0 | 0.60 |
| 10 | 5nz6_A_G12_C13 | AAA | AA00 | 80 | 0.21 |
| 11 | 5nz6_A_C13_G14 | AAw | AA06 | 11 | 0.44 |
| 12 | 5nz6_A_G14_C15 | AAA | AA00 | 79 | 0.26 |
| 13 | 5nz6_A_C15_C16 | AAw | AA01 | 79 | 0.10 |
| 14 | 5nz6_A_C16_G17 | AAA | AA00 | 50 | 0.24 |
| 15 | 5nz6_A_G17_U18 | AAA | AA00 | 62 | 0.25 |
| 16 | 5nz6_A_U18_A19 | AAA | AA00 | 63 | 0.30 |
| 17 | 5nz6_A_A19_C20 | AAA | AA08 | 25 | 0.64 |
| 18 | 5nz6_A_C20_C21 | AAA | AA08 | 90 | 0.17 |
| 19 | 5nz6_A_C21_C22 | AAA | AA00 | 47 | 0.24 |
| 20 | 5nz6_A_C22_G23 | AAw | AA10 | 82 | 0.17 |
| 21 | 5nz6_A_G23_G24 | A-B | AB04 | 49 | 0.30 |
| 22 | 5nz6_A_G24_U25 | OPN | OP22 | 34 | 0.64 |
| 23 | 5nz6_A_U25_C26 | NAN | NANT | 0 | 0.46 |
| 24 | 5nz6_A_C26_A27 | NAN | NANT | 0 | 0.38 |
| 25 | 5nz6_A_A27_C28 | NAN | NANT | 0 | 0.99 |
| 26 | 5nz6_A_C28_G29 | NAN | NANT | 0 | 1.37 |
| 27 | 5nz6_A_G29_A30 | NAN | NANT | 0 | 1.29 |
| 28 | 5nz6_A_A30_C31 | NAN | NANT | 0 | 0.44 |
| 29 | 5nz6_A_C31_A32 | AAA | AA08 | 65 | 0.47 |
| 30 | 5nz6_A_A32_A33 | AAA | AA08 | 75 | 0.25 |
| 31 | 5nz6_A_A33_G34 | AAw | AA06 | 37 | 0.32 |
| 32 | 5nz6_A_G34_A35 | NAN | NANT | 0 | 0.59 |
| 33 | 5nz6_A_A35_C36 | NAN | NANT | 0 | 0.47 |
| 34 | 5nz6_A_C36_G37 | AAA | AA00 | 55 | 0.24 |
| 35 | 5nz6_A_G37_G38 | AAA | AA00 | 69 | 0.22 |
| 36 | 5nz6_A_G40_C41 | AAA | AA08 | 54 | 0.56 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| visible |
| Color by NtC (balls) |
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| A | ||||
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| A-B | ||||
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| B-A | ||||
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| B | ||||
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| IC | ||||
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| OPN | ||||
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| Z | ||||
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