DNATCO v4.1: results

The structure of the thermobifida fusca guanidine III riboswitch with guanidine.

Results of the assignment of 76 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5nwq_A_C1_C2	AAA	AA00	85	0.20	AA00
02	5nwq_A_C2_G3	AAA	AA00	76	0.18	AA00
03	5nwq_A_G3_G4	AAA	AA00	92	0.15	AA00
04	5nwq_A_G4_A5	NAN	NANT	0	0.83	AA13
05	5nwq_A_A5_C6	A-B	AB01	34	0.37	AB01
06	5nwq_A_C6_G7	OPN	OP15	9	0.77	OP15
07	5nwq_A_G7_A8	AAA	AA00	71	0.29	AA00
08	5nwq_A_A8_G9	AAA	AA00	89	0.12	AA00
09	5nwq_A_G9_G10	AAA	AA00	66	0.15	AA00
10	5nwq_A_G10_U11	ZZZ	ZZ01	93	0.16	ZZ01
11	5nwq_A_U11_G12	NAN	NANT	0	0.60	OP26
12	5nwq_A_G12_C13	AAA	AA00	80	0.14	AA00
13	5nwq_A_C13_G14	AAw	AA01	93	0.15	AA01
14	5nwq_A_G14_C15	AAA	AA00	67	0.26	AA00
15	5nwq_A_C15_C16	AAw	AA01	89	0.11	AA01
16	5nwq_A_C16_G17	AAA	AA00	80	0.16	AA00
17	5nwq_A_G17_U18	AAA	AA00	91	0.16	AA00
18	5nwq_A_U18_A19	AAA	AA00	90	0.21	AA00
19	5nwq_A_A19_C20	AAA	AA08	12	0.62	AA08
20	5nwq_A_C20_C21	AAA	AA00	81	0.23	AA00
21	5nwq_A_C21_C22	AAA	AA00	71	0.15	AA00
22	5nwq_A_C22_G23	AAw	AA01	77	0.14	AA01
23	5nwq_A_G23_G24	A-B	AB05	75	0.26	AB05
24	5nwq_A_G24_U25	NAN	NANT	0	1.75	OP27
25	5nwq_A_U25_C26	OPN	OP21	49	0.42	OP21
26	5nwq_A_C26_A27	OPN	OP11	69	0.39	OP11
27	5nwq_A_A27_G28	NAN	NANT	0	0.73	OP06
28	5nwq_A_G28_G29	NAN	NANT	0	1.14	IC03
29	5nwq_A_G29_A30	NAN	NANT	0	1.35	OP10
30	5nwq_A_A30_C31	AAA	AA08	42	0.44	AA08
31	5nwq_A_C31_A32	AAA	AA00	75	0.34	AA00
32	5nwq_A_A32_A33	AAA	AA00	76	0.19	AA00
33	5nwq_A_A33_G34	AAw	AA01	87	0.17	AA01
34	5nwq_A_G34_A35	NAN	NANT	0	0.57	AA07
35	5nwq_A_A35_C36	NAN	NANT	0	0.56	BA05
36	5nwq_A_C36_G37	AAA	AA00	65	0.18	AA00
37	5nwq_A_G37_G38	AAA	AA00	71	0.18	AA00
38	5nwq_A_G40_C41	AAA	AA00	91	0.17	AA00
39	5nwq_B_C1_C2	AAA	AA00	87	0.17	AA00
40	5nwq_B_C2_G3	AAA	AA00	78	0.18	AA00
41	5nwq_B_G3_G4	AAA	AA00	92	0.12	AA00
42	5nwq_B_G4_A5	NAN	NANT	0	0.81	AA13
43	5nwq_B_A5_C6	A-B	AB01	38	0.34	AB01
44	5nwq_B_C6_G7	B-A	BA08	45	0.40	BA08
45	5nwq_B_G7_A8	AAA	AA00	87	0.19	AA00
46	5nwq_B_A8_G9	AAA	AA00	90	0.10	AA00
47	5nwq_B_G9_G10	AAA	AA00	62	0.15	AA00
48	5nwq_B_G10_U11	ZZZ	ZZ01	91	0.18	ZZ01
49	5nwq_B_U11_G12	NAN	NANT	0	0.57	OP26
50	5nwq_B_G12_C13	AAA	AA00	79	0.16	AA00
51	5nwq_B_C13_G14	AAw	AA01	92	0.14	AA01
52	5nwq_B_G14_C15	AAA	AA00	60	0.29	AA00
53	5nwq_B_C15_C16	AAw	AA01	88	0.12	AA01
54	5nwq_B_C16_G17	AAA	AA00	72	0.20	AA00
55	5nwq_B_G17_U18	AAA	AA00	90	0.15	AA00
56	5nwq_B_U18_A19	AAA	AA00	88	0.22	AA00
57	5nwq_B_A19_C20	AAA	AA08	11	0.63	AA08
58	5nwq_B_C20_C21	AAA	AA00	78	0.24	AA00
59	5nwq_B_C21_C22	AAA	AA00	74	0.10	AA00
60	5nwq_B_C22_G23	AAw	AA01	76	0.13	AA01
61	5nwq_B_G23_G24	A-B	AB05	79	0.28	AB05
62	5nwq_B_G24_U25	NAN	NANT	0	1.76	OP27
63	5nwq_B_U25_C26	OPN	OP21	31	0.56	OP21
64	5nwq_B_C26_A27	OPN	OP11	69	0.48	OP11
65	5nwq_B_A27_G28	NAN	NANT	0	1.23	OP28
66	5nwq_B_G28_G29	NAN	NANT	0	1.12	IC03
67	5nwq_B_G29_A30	NAN	NANT	0	1.18	ZZ02
68	5nwq_B_A30_C31	SYN	AAS1	81	0.34	AAS1
69	5nwq_B_C31_A32	AAA	AA00	70	0.35	AA00
70	5nwq_B_A32_A33	AAA	AA08	88	0.16	AA08
71	5nwq_B_A33_G34	AAw	AA01	85	0.17	AA01
72	5nwq_B_G34_A35	NAN	NANT	0	0.56	AA07
73	5nwq_B_A35_C36	NAN	NANT	0	0.56	BA05
74	5nwq_B_C36_G37	AAA	AA00	69	0.18	AA00
75	5nwq_B_G37_G38	AAA	AA00	68	0.19	AA00
76	5nwq_B_G40_C41	AAA	AA00	88	0.20	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

Similarity of step to class averages

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Results of the assignment of 76 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

User-based restraints

Definitions

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