Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
MS2 PROTEIN CAPSID/RNA COMPLEX
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5msf_R_C1_C2 | AAA | AA00 | 85 | 0.16 |
| 02 | 5msf_R_C2_G3 | AAA | AA00 | 51 | 0.27 |
| 03 | 5msf_R_G3_G4 | AAA | AA00 | 74 | 0.23 |
| 04 | 5msf_R_G4_A5 | NAN | NANT | 0 | 0.88 |
| 05 | 5msf_R_A5_G6 | NAN | NANT | 0 | 0.81 |
| 06 | 5msf_R_G6_G7 | AAA | AA00 | 40 | 0.28 |
| 07 | 5msf_R_G7_A8 | AAA | AA00 | 77 | 0.23 |
| 08 | 5msf_R_A8_U9 | NAN | NANT | 0 | 1.70 |
| 09 | 5msf_R_U9_C10 | NAN | NANT | 0 | 0.60 |
| 10 | 5msf_R_C10_A11 | NAN | NANT | 0 | 1.38 |
| 11 | 5msf_R_A11_C12 | NAN | NANT | 0 | 0.64 |
| 12 | 5msf_R_C12_C13 | AAA | AA00 | 60 | 0.25 |
| 13 | 5msf_R_C13_A14 | AAA | AA00 | 95 | 0.14 |
| 14 | 5msf_R_A14_C15 | AAA | AA00 | 79 | 0.22 |
| 15 | 5msf_R_C15_G16 | AAA | AA00 | 81 | 0.25 |
| 16 | 5msf_R_G16_G17 | AAw | AA06 | 86 | 0.19 |
| 17 | 5msf_R_G17_G18 | AAA | AA03 | 28 | 0.48 |
| 18 | 5msf_S_C2_G3 | AAu | AA12 | 51 | 0.51 |
| 19 | 5msf_S_G3_G4 | AAA | AA00 | 63 | 0.23 |
| 20 | 5msf_S_G4_A5 | NAN | NANT | 0 | 0.87 |
| 21 | 5msf_S_A5_G6 | NAN | NANT | 0 | 0.80 |
| 22 | 5msf_S_G6_G7 | AAA | AA08 | 10 | 0.46 |
| 23 | 5msf_S_G7_A8 | AAA | AA00 | 57 | 0.25 |
| 24 | 5msf_S_A8_U9 | NAN | NANT | 0 | 1.66 |
| 25 | 5msf_S_U9_C10 | NAN | NANT | 0 | 0.59 |
| 26 | 5msf_S_C10_A11 | NAN | NANT | 0 | 0.55 |
| 27 | 5msf_S_A11_C12 | NAN | NANT | 0 | 0.62 |
| 28 | 5msf_S_C12_C13 | AAA | AA00 | 89 | 0.19 |
| 29 | 5msf_S_C13_A14 | AAA | AA00 | 66 | 0.28 |
| 30 | 5msf_S_C15_G16 | NAN | NANT | 0 | 0.55 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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