Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-p53R2)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5mg7_C_DA.B1_DG.B2 | BBB | BB00 | 75 | 0.27 |
| 02 | 5mg7_C_DT.A1_DG.A2 | BBB | BB00 | 82 | 0.25 |
| 03 | 5mg7_C_DG.A2_DA.A3 | BBB | BB00 | 69 | 0.23 |
| 04 | 5mg7_C_DG.B2_DA.B3 | BBB | BB00 | 88 | 0.15 |
| 05 | 5mg7_C_DA.A3_DC.A4 | BB2 | BB07 | 60 | 0.35 |
| 06 | 5mg7_C_DA.B3_DC.B4 | B12 | BB04 | 80 | 0.21 |
| 07 | 5mg7_C_DC.A4_DA.A5 | NAN | NANT | 0 | 0.61 |
| 08 | 5mg7_C_DC.B4_DA.B5 | NAN | NANT | 0 | 0.58 |
| 09 | 5mg7_C_DA.A5_DT.A6 | SYN | BBS1 | 25 | 0.34 |
| 10 | 5mg7_C_DA.B5_DT.B6 | SYN | BBS1 | 31 | 0.32 |
| 11 | 5mg7_C_DT.A6_DG.A7 | BB2 | BB07 | 69 | 0.33 |
| 12 | 5mg7_C_DT.B6_DG.B7 | BB2 | BB07 | 39 | 0.35 |
| 13 | 5mg7_C_DG.A7_DC.A8 | BBB | BB01 | 92 | 0.11 |
| 14 | 5mg7_C_DG.B7_DC.B8 | BBB | BB00 | 94 | 0.15 |
| 15 | 5mg7_C_DC.A8_DC.A9 | BBB | BB00 | 37 | 0.29 |
| 16 | 5mg7_C_DC.B8_DC.B9 | B12 | BB04 | 85 | 0.18 |
| 17 | 5mg7_C_DC.A9_DC.A10 | B-A | BA05 | 88 | 0.15 |
| 18 | 5mg7_C_DC.B9_DT.B10 | B-A | BA01 | 27 | 0.25 |
| 19 | 5mg7_C_DC.A10_DA.A11 | A-B | AB03 | 74 | 0.30 |
| 20 | 5mg7_C_DT.B10_DG.B11 | A-B | AB01 | 82 | 0.16 |
| 21 | 5mg7_C_DA.A11_DG.A12 | BBB | BB00 | 86 | 0.24 |
| 22 | 5mg7_C_DG.B11_DG.B12 | BBB | BB00 | 72 | 0.30 |
| 23 | 5mg7_C_DG.A12_DG.A13 | BBB | BB00 | 82 | 0.22 |
| 24 | 5mg7_C_DG.B12_DG.B13 | BBB | BB00 | 80 | 0.16 |
| 25 | 5mg7_C_DG.A13_DC.A14 | BB2 | BB07 | 59 | 0.34 |
| 26 | 5mg7_C_DG.B13_DC.B14 | BBB | BB00 | 63 | 0.26 |
| 27 | 5mg7_C_DC.A14_DA.A15 | NAN | NANT | 0 | 0.69 |
| 28 | 5mg7_C_DC.B14_DA.B15 | NAN | NANT | 0 | 0.58 |
| 29 | 5mg7_C_DA.A15_DT.A16 | SYN | BBS1 | 14 | 0.33 |
| 30 | 5mg7_C_DA.B15_DT.B16 | SYN | BBS1 | 29 | 0.34 |
| 31 | 5mg7_C_DT.A16_DG.A17 | BB2 | BB07 | 69 | 0.32 |
| 32 | 5mg7_C_DT.B16_DG.B17 | BB2 | BB07 | 45 | 0.34 |
| 33 | 5mg7_C_DG.A17_DT.A18 | BBB | BB00 | 89 | 0.20 |
| 34 | 5mg7_C_DG.B17_DT.B18 | BBB | BB01 | 89 | 0.09 |
| 35 | 5mg7_C_DT.A18_DC.A19 | B12 | BB04 | 65 | 0.23 |
| 36 | 5mg7_C_DT.B18_DC.B19 | BBB | BB00 | 41 | 0.29 |
| 37 | 5mg7_C_DC.A19_DT.A20 | B-A | BA05 | 72 | 0.09 |
| 38 | 5mg7_C_DC.B19_DA.B20 | B-A | BA05 | 80 | 0.18 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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| Color by conformation group (pyramids) | |
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| B | ||||
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