Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LWC2)
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5mcw_C_DG1_DG2 | BBB | BB00 | 75 | 0.30 |
| 02 | 5mcw_C_DG2_DG3 | BBB | BB00 | 83 | 0.24 |
| 03 | 5mcw_C_DG3_DC4 | B12 | BB04 | 78 | 0.23 |
| 04 | 5mcw_C_DC4_DI5 | BBB | BB00 | 30 | 0.40 |
| 05 | 5mcw_C_DI5_5CM6 | BBB | BB00 | 47 | 0.35 |
| 06 | 5mcw_C_5CM6_DG7 | B12 | BB04 | 70 | 0.38 |
| 07 | 5mcw_C_DG7_DC8 | BBB | BB00 | 83 | 0.19 |
| 08 | 5mcw_C_DC8_DC9 | B12 | BB04 | 71 | 0.17 |
| 09 | 5mcw_C_DC9_DC10 | B-A | BA01 | 57 | 0.25 |
| 10 | 5mcw_C_DC10_DG11 | A-B | AB01 | 22 | 0.34 |
| 11 | 5mcw_C_DG11_DG12 | BBB | BB00 | 77 | 0.29 |
| 12 | 5mcw_C_DG12_DG13 | BBB | BB00 | 82 | 0.27 |
| 13 | 5mcw_C_DG13_DC14 | B12 | BB04 | 73 | 0.25 |
| 14 | 5mcw_C_DC14_DI15 | BBB | BB00 | 27 | 0.38 |
| 15 | 5mcw_C_DI15_5CM16 | BBB | BB00 | 43 | 0.35 |
| 16 | 5mcw_C_5CM16_DG17 | BB2 | BB07 | 41 | 0.34 |
| 17 | 5mcw_C_DG17_DC18 | BBB | BB00 | 85 | 0.20 |
| 18 | 5mcw_C_DC18_DC19 | B12 | BB04 | 89 | 0.16 |
| 19 | 5mcw_C_DC19_DC20 | B-A | BA01 | 17 | 0.26 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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