Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LWC1)

Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015mcv_C_DG1_DG2BBBBB00860.24 BB00
025mcv_C_DG2_DG3BBBBB00870.22 BB00
035mcv_C_DG3_DC4B12BB04820.22 BB04
045mcv_C_DC4_DI5BBBBB00440.35 BB00
055mcv_C_DI5_5CM6BBBBB00490.38 BB00
065mcv_C_5CM6_DG7B12BB04640.39 BB04
075mcv_C_DG7_DC8BBBBB00860.19 BB00
085mcv_C_DC8_DC9B12BB04810.21 BB04
095mcv_C_DC9_DC10B-ABA05560.13 BA05
105mcv_C_DC10_DG11NANNANT00.39 AB01
115mcv_C_DG11_DG12BBBBB00880.23 BB00
125mcv_C_DG12_DG13BBBBB00870.22 BB00
135mcv_C_DG13_DC14B12BB04800.22 BB04
145mcv_C_DC14_DI15BBBBB00460.35 BB00
155mcv_C_DI15_5CM16BBBBB00570.37 BB00
165mcv_C_5CM16_DG17B12BB04680.38 BB04
175mcv_C_DG17_DC18BBBBB00850.20 BB00
185mcv_C_DC18_DC19B12BB04760.21 BB04
195mcv_C_DC19_DC20B-ABA05580.12 BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N