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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of the cytoplasmic complex with She2p, She3p, and the ASH1 mRNA E3-localization element

Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015m0j_E_G1_A2AAAAA00770.15 AA00
025m0j_E_A2_U3AAAAA00900.15 AA00
035m0j_E_U3_A4AAAAA00860.14 AA00
045m0j_E_A4_A5ICLIC01800.20 IC01
055m0j_E_A5_C6NANNANT00.43 OP13
065m0j_E_C6_U7NANNANT00.72 OP29
075m0j_E_U7_G8NANNANT00.56 ZZ1S
085m0j_E_G8_A9NANNANT00.66 BBS1
095m0j_E_A9_A10NANNANT00.84 OP24
105m0j_E_A10_U11AAAAA00700.30 AA00
115m0j_E_U11_C12AAAAA00840.20 AA00
125m0j_E_C12_G13AAAAA00800.21 AA00
135m0j_E_G13_A14OPNOP03570.16 OP03
145m0j_E_A14_A15AAAAA08650.32 AA08
155m0j_E_A15_A16AAAAA00400.28 AA00
165m0j_E_A16_G17AAwAA05750.32 AA05
175m0j_E_G17_A18AAAAA08600.30 AA08
185m0j_E_A18_C19AAAAA00800.26 AA00
195m0j_E_C19_A20NANNANT00.50 OP06
205m0j_E_A20_U21OPNOP21790.35 OP21
215m0j_E_U21_U22OPNOP11920.26 OP11
225m0j_E_U22_A23AAAAA00930.11 AA00
235m0j_E_A23_U24AAAAA00730.12 AA00
245m0j_E_U24_C25AAAAA00910.19 AA00
255m0j_E_C25_A26SYNAB2S350.31 AB2S
265m0j_E_A26_C27NANNANT00.85 OP13
275m0j_E_C27_G28NANNANT01.70 OP11
285m0j_F_G1_A2AAAAA00780.15 AA00
295m0j_F_A2_U3AAAAA00920.14 AA00
305m0j_F_U3_A4AAAAA00870.14 AA00
315m0j_F_A4_A5ICLIC01790.23 IC01
325m0j_F_A5_C6NANNANT00.46 OP13
335m0j_F_C6_U7NANNANT01.39 IC03
345m0j_F_U7_G8NANNANT00.52 ZZ1S
355m0j_F_G8_A9NANNANT00.67 BBS1
365m0j_F_A9_A10NANNANT00.82 OP24
375m0j_F_A10_U11AAAAA00690.30 AA00
385m0j_F_U11_C12AAAAA00830.21 AA00
395m0j_F_C12_G13AAAAA00800.23 AA00
405m0j_F_G13_A14OPNOP03640.17 OP03
415m0j_F_A14_A15AAAAA08670.32 AA08
425m0j_F_A15_A16AAAAA00390.26 AA00
435m0j_F_A16_G17NANNANT00.96 AA04
445m0j_F_G17_A18AAAAA08640.27 AA08
455m0j_F_A18_C19AAAAA00800.27 AA00
465m0j_F_C19_A20NANNANT00.51 OP06
475m0j_F_A20_U21OPNOP21760.38 OP21
485m0j_F_U21_U22OPNOP11870.31 OP11
495m0j_F_U22_A23AAAAA00920.11 AA00
505m0j_F_A23_U24AAAAA00760.13 AA00
515m0j_F_U24_C25AAAAA00900.19 AA00
525m0j_F_C25_A26A-BAB05890.16 AB05
535m0j_F_A26_C27NANNANT00.74 OP14
545m0j_F_C27_G28NANNANT01.00 ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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