DNATCO v4.1: results

The crystal structure of 7SK 5'-hairpin - Osmium derivative

Results of the assignment of 126 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	5lyv_A_G24_G25	AAA	AA00	68	0.21	AA00
002	5lyv_A_G25_G26	AAw	AA06	54	0.26	AA06
003	5lyv_A_G26_A27	AAA	AA00	52	0.23	AA00
004	5lyv_A_A27_U28	AAA	AA08	89	0.16	AA08
005	5lyv_A_U28_C29	AAA	AA08	86	0.27	AA08
006	5lyv_A_C29_U30	AAA	AA00	76	0.25	AA00
007	5lyv_A_U30_G31	AAA	AA00	59	0.29	AA00
008	5lyv_A_G31_U32	AAA	AA00	68	0.28	AA00
009	5lyv_A_U32_C33	AAA	AA00	80	0.14	AA00
010	5lyv_A_C33_A34	NAN	NANT	0	1.50	IC04
011	5lyv_A_A34_C35	NAN	NANT	0	1.03	OP26
012	5lyv_A_C35_C36	AAA	AA00	90	0.20	AA00
013	5lyv_A_C36_C37	AAA	AA00	92	0.21	AA00
014	5lyv_A_C37_C38	AAA	AA00	95	0.15	AA00
015	5lyv_A_C38_A.A39	AAA	AA00	83	0.17	AA00
016	5lyv_A_C38_A.B39	AAA	AA08	84	0.22	AA08
017	5lyv_A_A.A39_U.A40	ICL	IC01	24	0.55	IC01
018	5lyv_A_A.B39_U.B40	NAN	NANT	0	1.46	OP31
019	5lyv_A_U.A40_U.A41	NAN	NANT	0	1.73	OP26
020	5lyv_A_U.B40_U.B41	NAN	NANT	0	1.16	ZZ2S
021	5lyv_A_U.A41_G.A42	NAN	NANT	0	0.85	OP31
022	5lyv_A_U.B41_G.B42	NAN	NANT	0	0.86	ZZS2
023	5lyv_A_G.A42_A43	AAA	AA00	41	0.30	AA00
024	5lyv_A_G.B42_A43	AAA	AA00	55	0.29	AA00
025	5lyv_A_A43_U44	AAA	AA08	89	0.19	AA08
026	5lyv_A_U44_C45	AAA	AA00	83	0.17	AA00
027	5lyv_A_C45_G46	AAA	AA00	79	0.21	AA00
028	5lyv_A_G46_C47	AAA	AA00	92	0.09	AA00
029	5lyv_A_C47_C48	AAA	AA00	88	0.20	AA00
030	5lyv_A_C48.C_G48.D	ZZZ	ZZ1S	49	0.19	ZZ1S
031	5lyv_A_C48_U48.A	AAA	AA00	86	0.28	AA00
032	5lyv_A_G48.D_G60	NAN	NANT	0	0.46	AA05
033	5lyv_A_U48.A_U48.B	NAN	NANT	0	0.36	OP09
034	5lyv_A_U48.B_C48.C	NAN	NANT	0	1.40	IC04
035	5lyv_A_G60_G61	AAA	AA00	72	0.17	AA00
036	5lyv_A_G61_C.A62	AAA	AA00	88	0.15	AA00
037	5lyv_A_G61_C.B62	AAA	AA00	86	0.17	AA00
038	5lyv_A_C.A62_U.A63	NAN	NANT	0	1.08	IC04
039	5lyv_A_C.B62_U.B63	NAN	NANT	0	0.95	IC04
040	5lyv_A_U.A63_G.A64	NAN	NANT	0	0.85	OP26
041	5lyv_A_U.B63_G.B64	NAN	NANT	0	0.67	OP26
042	5lyv_A_G.A64_A65	AAA	AA00	42	0.27	AA00
043	5lyv_A_G.B64_A65	AAA	AA00	55	0.27	AA00
044	5lyv_A_A65_U66	AAA	AA00	68	0.21	AA00
045	5lyv_A_U66_C67	AAw	AA01	89	0.12	AA01
046	5lyv_A_C67_U68	AAA	AA00	76	0.30	AA00
047	5lyv_A_U68_G69	AAA	AA00	86	0.15	AA00
048	5lyv_A_G69_G70	AAA	AA00	88	0.21	AA00
049	5lyv_A_G70_C.A71	ICL	IC02	36	0.37	IC02
050	5lyv_A_G70_C.B71	NAN	NANT	0	0.34	IC01
051	5lyv_A_C.A71_U.A72	NAN	NANT	0	1.59	OP31
052	5lyv_A_C.B71_U.B72	NAN	NANT	0	1.61	OP17
053	5lyv_A_U.A72_G.A73	NAN	NANT	0	0.98	OP31
054	5lyv_A_U.B72_G.B73	NAN	NANT	0	1.39	OP29
055	5lyv_A_G.A73_G.A74	A-B	AB04	47	0.29	AB04
056	5lyv_A_G.B73_G.B74	NAN	NANT	0	0.82	ZZS2
057	5lyv_A_G.A74_C75	BB2	BB07	30	0.49	BB07
058	5lyv_A_G.B74_C75	BB2	BB07	39	0.51	BB07
059	5lyv_A_C75_U76	NAN	NANT	0	0.64	OP14
060	5lyv_A_U76_A77	NAN	NANT	0	1.14	OP13
061	5lyv_A_A77_G78	NAN	NANT	0	0.50	OP26
062	5lyv_A_G78_G79	AAA	AA00	50	0.23	AA00
063	5lyv_A_G79_C80	AAA	AA00	90	0.17	AA00
064	5lyv_A_C80_G81	AAA	AA00	67	0.16	AA00
065	5lyv_A_G81_G82	AAA	AA08	81	0.19	AA08
066	5lyv_A_G82_G83	AAA	AA00	79	0.14	AA00
067	5lyv_A_G83_U84	AAA	AA00	69	0.10	AA00
068	5lyv_A_U84_C85	AAw	AA06	28	0.21	AA06
069	5lyv_A_C85_C86	AAA	AA00	48	0.30	AA00
070	5lyv_A_C86_CCC101	AAA	AA00	54	0.28	AA00
071	5lyv_B_G24_G25	AAA	AA00	74	0.17	AA00
072	5lyv_B_G25_G26	AAw	AA01	13	0.23	AA01
073	5lyv_B_G26_A27	AAA	AA08	59	0.21	AA08
074	5lyv_B_A27_U28	AAA	AA08	80	0.20	AA08
075	5lyv_B_U28_C29	AAA	AA08	71	0.33	AA08
076	5lyv_B_C29_U30	AAA	AA00	78	0.25	AA00
077	5lyv_B_U30_G31	AAA	AA00	58	0.30	AA00
078	5lyv_B_G31_U32	AAA	AA00	70	0.27	AA00
079	5lyv_B_U32_C33	AAA	AA00	82	0.14	AA00
080	5lyv_B_C33_A34	NAN	NANT	0	1.48	IC04
081	5lyv_B_A34_C35	NAN	NANT	0	1.02	OP26
082	5lyv_B_C35_C36	AAA	AA00	92	0.18	AA00
083	5lyv_B_C36_C37	AAA	AA00	92	0.21	AA00
084	5lyv_B_C37_C38	AAA	AA00	97	0.14	AA00
085	5lyv_B_C38_A39	AAA	AA00	90	0.15	AA00
086	5lyv_B_A39_U40	ICL	IC01	60	0.31	IC01
087	5lyv_B_U40_U41	NAN	NANT	0	0.76	OP21
088	5lyv_B_U41_G42	NAN	NANT	0	0.89	OP31
089	5lyv_B_G42_A43	AAA	AA00	54	0.26	AA00
090	5lyv_B_A43_U44	AAA	AA08	88	0.20	AA08
091	5lyv_B_U44_C45	AAA	AA00	84	0.16	AA00
092	5lyv_B_C45_G46	AAA	AA00	80	0.21	AA00
093	5lyv_B_G46_C47	AAA	AA00	92	0.10	AA00
094	5lyv_B_C47_C48	AAA	AA00	88	0.20	AA00
095	5lyv_B_C48.C_G48.D	ZZZ	ZZ1S	61	0.23	ZZ1S
096	5lyv_B_C48_U48.A	AAA	AA00	86	0.28	AA00
097	5lyv_B_G48.D_G60	NAN	NANT	0	0.47	AA05
098	5lyv_B_U48.A_U48.B	NAN	NANT	0	0.33	OP09
099	5lyv_B_U48.B_C48.C	NAN	NANT	0	1.47	IC04
100	5lyv_B_G60_G61	AAA	AA00	73	0.17	AA00
101	5lyv_B_G61_C62	AAA	AA00	88	0.20	AA00
102	5lyv_B_C62_U63	NAN	NANT	0	1.08	IC04
103	5lyv_B_U63_G64	NAN	NANT	0	0.89	OP26
104	5lyv_B_G64_A65	AAA	AA00	17	0.32	AA00
105	5lyv_B_A65_U66	AAA	AA00	64	0.23	AA00
106	5lyv_B_U66_C67	AAw	AA01	90	0.12	AA01
107	5lyv_B_C67_U68	AAA	AA00	76	0.31	AA00
108	5lyv_B_U68_G69	AAA	AA00	88	0.14	AA00
109	5lyv_B_G69_G70	AAA	AA00	89	0.21	AA00
110	5lyv_B_G70_C71	NAN	NANT	0	0.67	AB04
111	5lyv_B_C71_U72	NAN	NANT	0	1.26	OP30
112	5lyv_B_U72_G73	NAN	NANT	0	1.19	OP31
113	5lyv_B_G73_G74	A-B	AB04	51	0.20	AB04
114	5lyv_B_G74_C75	BB2	BB07	44	0.49	BB07
115	5lyv_B_C75_U76	NAN	NANT	0	0.39	OP17
116	5lyv_B_U76_A77	NAN	NANT	0	2.00	OP31
117	5lyv_B_A77_G78	NAN	NANT	0	0.51	OP26
118	5lyv_B_G78_G79	AAA	AA00	48	0.24	AA00
119	5lyv_B_G79_C80	AAA	AA00	89	0.18	AA00
120	5lyv_B_C80_G81	AAA	AA00	64	0.17	AA00
121	5lyv_B_G81_G82	AAA	AA08	81	0.20	AA08
122	5lyv_B_G82_G83	AAA	AA00	80	0.14	AA00
123	5lyv_B_G83_U84	AAA	AA00	68	0.11	AA00
124	5lyv_B_U84_C85	AAw	AA11	42	0.32	AA11
125	5lyv_B_C85_C86	AAA	AA08	53	0.21	AA08
126	5lyv_B_C86_CCC101	NAN	NANT	0	0.41	AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 126 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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