Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Lysine 120-acetylated P53 DNA binding domain in a complex with the BAX response element.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5lgy_E_DT1_DC2 | B-A | BA13 | 18 | 0.55 |
| 02 | 5lgy_E_DC2_DA3 | A-B | AB05 | 12 | 0.27 |
| 03 | 5lgy_E_DA3_DC4 | BBB | BB00 | 75 | 0.22 |
| 04 | 5lgy_E_DC4_DA5 | BBB | BB00 | 10 | 0.28 |
| 05 | 5lgy_E_DA5_DA6 | BBB | BB00 | 17 | 0.37 |
| 06 | 5lgy_E_DA6_DG7 | B12 | BB04 | 55 | 0.43 |
| 07 | 5lgy_E_DG7_DT8 | BBB | BB00 | 53 | 0.29 |
| 08 | 5lgy_E_DT8_DT9 | BBB | BB01 | 63 | 0.22 |
| 09 | 5lgy_E_DT9_DA10 | BBB | BB00 | 69 | 0.30 |
| 10 | 5lgy_E_DA10_DG11 | NAN | NANT | 0 | 0.90 |
| 11 | 5lgy_E_DG11_DA12 | NAN | NANT | 0 | 0.64 |
| 12 | 5lgy_E_DA12_DG13 | B12 | BB04 | 42 | 0.41 |
| 13 | 5lgy_E_DG13_DA14 | miB | BB15 | 30 | 0.39 |
| 14 | 5lgy_E_DA14_DC15 | BBw | BB02 | 7 | 0.32 |
| 15 | 5lgy_E_DC15_DA16 | NAN | NANT | 0 | 0.46 |
| 16 | 5lgy_E_DA16_DA17 | NAN | NANT | 0 | 0.55 |
| 17 | 5lgy_E_DA17_DG18 | B12 | BB04 | 16 | 0.34 |
| 18 | 5lgy_E_DG18_DC19 | NAN | NANT | 0 | 0.45 |
| 19 | 5lgy_E_DC19_DC20 | B12 | BB04 | 26 | 0.35 |
| 20 | 5lgy_E_DC20_DT21 | NAN | NANT | 0 | 0.38 |
| 21 | 5lgy_F_DA1_DG2 | NAN | NANT | 0 | 0.45 |
| 22 | 5lgy_F_DG2_DG3 | BBB | BB01 | 11 | 0.25 |
| 23 | 5lgy_F_DG3_DC4 | B-A | BA05 | 15 | 0.32 |
| 24 | 5lgy_F_DC4_DT5 | A-B | AB03 | 42 | 0.31 |
| 25 | 5lgy_F_DT5_DT6 | BBB | BB00 | 56 | 0.47 |
| 26 | 5lgy_F_DT6_DG7 | BB2 | BB07 | 51 | 0.30 |
| 27 | 5lgy_F_DG7_DT8 | NAN | NANT | 0 | 0.55 |
| 28 | 5lgy_F_DT8_DC9 | B-A | BA05 | 18 | 0.45 |
| 29 | 5lgy_F_DC9_DT10 | NAN | NANT | 0 | 0.63 |
| 30 | 5lgy_F_DT10_DC11 | NAN | NANT | 0 | 0.68 |
| 31 | 5lgy_F_DC11_DT12 | NAN | NANT | 0 | 1.03 |
| 32 | 5lgy_F_DT12_DA13 | NAN | NANT | 0 | 0.66 |
| 33 | 5lgy_F_DA13_DA14 | NAN | NANT | 0 | 0.33 |
| 34 | 5lgy_F_DA14_DC15 | BBB | BB01 | 77 | 0.23 |
| 35 | 5lgy_F_DC15_DT16 | NAN | NANT | 0 | 0.33 |
| 36 | 5lgy_F_DT16_DT17 | NAN | NANT | 0 | 0.56 |
| 37 | 5lgy_F_DT17_DG18 | NAN | NANT | 0 | 0.68 |
| 38 | 5lgy_F_DG18_DT19 | BBB | BB00 | 65 | 0.23 |
| 39 | 5lgy_F_DT19_DG20 | BBB | BB00 | 64 | 0.23 |
| 40 | 5lgy_F_DG20_DA21 | NAN | NANT | 0 | 0.57 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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