Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
hLRH-1 DNA Binding Domain - 12bp Oct4 promoter complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5l0m_C_DC89_DT90 | BBB | BB00 | 56 | 0.18 |
| 02 | 5l0m_C_DT90_DA91 | BBB | BB00 | 66 | 0.28 |
| 03 | 5l0m_C_DA91_DG92 | B12 | BB04 | 58 | 0.27 |
| 04 | 5l0m_C_DG92_DC93 | BBB | BB00 | 79 | 0.17 |
| 05 | 5l0m_C_DC93_DC94 | BBB | BB01 | 48 | 0.18 |
| 06 | 5l0m_C_DC94_DT95 | BBB | BB00 | 36 | 0.25 |
| 07 | 5l0m_C_DT95_DT96 | BBw | BB02 | 76 | 0.21 |
| 08 | 5l0m_C_DT96_DG97 | BBB | BB00 | 29 | 0.46 |
| 09 | 5l0m_C_DG97_DA98 | BB2 | BB07 | 74 | 0.41 |
| 10 | 5l0m_C_DA98_DC99 | BBB | BB01 | 39 | 0.28 |
| 11 | 5l0m_C_DC99_DC100 | B-A | BA05 | 47 | 0.21 |
| 12 | 5l0m_B_DG107_DG108 | BBB | BB00 | 80 | 0.24 |
| 13 | 5l0m_B_DG108_DT109 | BBB | BB00 | 84 | 0.19 |
| 14 | 5l0m_B_DT109_DC110 | BBB | BB00 | 69 | 0.44 |
| 15 | 5l0m_B_DC110_DA111 | NAN | NANT | 0 | 0.56 |
| 16 | 5l0m_B_DA111_DA112 | B-A | BA13 | 85 | 0.19 |
| 17 | 5l0m_B_DA112_DG113 | A-B | AB05 | 60 | 0.18 |
| 18 | 5l0m_B_DG113_DG114 | BBB | BB00 | 57 | 0.32 |
| 19 | 5l0m_B_DG114_DC115 | BBB | BB01 | 87 | 0.17 |
| 20 | 5l0m_B_DC115_DT116 | BBB | BB00 | 74 | 0.24 |
| 21 | 5l0m_B_DT116_DA117 | NAN | NANT | 0 | 0.70 |
| 22 | 5l0m_B_DA117_DG118 | NAN | NANT | 0 | 0.59 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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