Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Wilms Tumor Protein (WT1) ZnF2-4 in complex with DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 23 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5kl2_B_DA1_DG.A2 | SYN | BBS1 | 18 | 0.45 |
| 02 | 5kl2_B_DA1_DG.B2 | SYN | BBS1 | 22 | 0.36 |
| 03 | 5kl2_B_DG.A2_DC.A3 | BBB | BB00 | 71 | 0.24 |
| 04 | 5kl2_B_DG.B2_DC.B3 | BBB | BB00 | 74 | 0.34 |
| 05 | 5kl2_B_DC.A3_DG4 | B12 | BB04 | 70 | 0.30 |
| 06 | 5kl2_B_DC.B3_DG4 | BB2 | BB07 | 61 | 0.38 |
| 07 | 5kl2_B_DG4_DT5 | B-A | BA05 | 83 | 0.29 |
| 08 | 5kl2_B_DT5_DG6 | AAA | AA02 | 14 | 0.58 |
| 09 | 5kl2_B_DG6_DG7 | A-B | AB01 | 82 | 0.21 |
| 10 | 5kl2_B_DG7_DG8 | BBB | BB00 | 83 | 0.19 |
| 11 | 5kl2_B_DG8_DA9 | B-A | BA05 | 94 | 0.26 |
| 12 | 5kl2_B_DA9_DG10 | BBB | BB00 | 11 | 0.38 |
| 13 | 5kl2_B_DG10_DT11 | B-A | BA05 | 89 | 0.13 |
| 14 | 5kl2_C_DT1_DA2 | A-B | AB05 | 17 | 0.21 |
| 15 | 5kl2_C_DA2_DC3 | BBB | BB00 | 83 | 0.19 |
| 16 | 5kl2_C_DC3_DT4 | B-A | BA05 | 92 | 0.20 |
| 17 | 5kl2_C_DT4_DC5 | BBB | BB01 | 40 | 0.28 |
| 18 | 5kl2_C_DC5_DC6 | BBB | BB01 | 66 | 0.20 |
| 19 | 5kl2_C_DC6_DC7 | BBB | BB01 | 69 | 0.25 |
| 20 | 5kl2_C_DC7_DA8 | BBB | BB01 | 76 | 0.09 |
| 21 | 5kl2_C_DA8_DC9 | BBB | BB00 | 33 | 0.38 |
| 22 | 5kl2_C_DC9_DG10 | B-A | BA05 | 84 | 0.22 |
| 23 | 5kl2_C_DG10_DC11 | NAN | NANT | 0 | 0.39 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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