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Conformers: ABBIImiBZICOPNSYNN
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Human DNA polymerase eta-DNA ternary complex: reaction first with 1 mM Mn2+ for 1800s then with 5 mM Mn2+ for 60s at 37 degree

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015kg2_T_DA2_DT3NANNANT01.21 OP18
025kg2_T_DT3_DT4BBBBB00660.22 BB00
035kg2_T_DT4_DA5BBBBB00910.14 BB00
045kg2_T_DA5_DT6B-ABA09770.31 BA09
055kg2_T_DT6_DG7NANNANT00.48 AB04
065kg2_T_DG7_DA8BBBBB00510.42 BB00
075kg2_T_DA8_DC9BBBBB00900.14 BB00
085kg2_T_DC9_DG10B12BB04690.24 BB04
095kg2_T_DG10_DC11BBBBB00870.18 BB00
105kg2_T_DC11_DT12BBBBB00830.26 BB00
115kg2_P_DA.A1_DG.A2BBBBB00520.37 BB00
125kg2_P_DA.B1_DG.B2BBBBB00540.37 BB00
135kg2_P_DG.A2_DC3BBBBB00350.23 BB00
145kg2_P_DG.B2_DC3BBBBB00350.23 BB00
155kg2_P_DC3_DG4BBBBB00560.18 BB00
165kg2_P_DG4_DT5BBBBB00790.17 BB00
175kg2_P_DT5_DC6B-ABA05780.10 BA05
185kg2_P_DC6_DA7B-ABA05550.30 BA05
195kg2_P_DA7_DT.A8A-BAB01640.26 AB01
205kg2_P_DA7_DT.B8AAAAA02180.46 AA02
215kg2_P_DT.B8_DA.B9NANNANT00.43 AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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