DNATCO v4.1: results

Crystal structure of the nucleosome containing the DNA with tetrahydrofuran (THF)

Results of the assignment of 282 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	5jrg_I_DA1_DT2	BBw	BB03	52	0.40	BB03
002	5jrg_I_DT2_DC3	BBw	BB02	16	0.39	BB02
003	5jrg_I_DC3_DA4	NAN	NANT	0	0.52	BB08
004	5jrg_I_DA4_DA5	BBB	BB00	27	0.35	BB00
005	5jrg_I_DA5_DT6	BBw	BB02	10	0.41	BB02
006	5jrg_I_DT6_DA7	BBB	BB00	70	0.23	BB00
007	5jrg_I_DA7_DT8	BBB	BB00	70	0.21	BB00
008	5jrg_I_DT8_DC9	BBB	BB00	12	0.21	BB00
009	5jrg_I_DC9_DC10	miB	BB10	57	0.25	BB10
010	5jrg_I_DC10_DA11	B12	BB05	32	0.38	BB05
011	5jrg_I_DA11_DC12	miB	BB15	46	0.38	BB15
012	5jrg_I_DC12_DC13	BBw	BB02	28	0.35	BB02
013	5jrg_I_DC13_DT14	BBB	BB00	35	0.43	BB00
014	5jrg_I_DT14_DG15	miB	BB15	30	0.47	BB15
015	5jrg_I_DG15_DC16	NAN	NANT	0	0.44	BB10
016	5jrg_I_DC16_DA17	BB2	BB07	66	0.28	BB07
017	5jrg_I_DA17_DG18	B12	BB04	42	0.31	BB04
018	5jrg_I_DG18_DA19	B12	BB04	87	0.16	BB04
019	5jrg_I_DA19_DT20	BBw	BB02	64	0.22	BB02
020	5jrg_I_DT20_DT21	BBB	BB00	50	0.21	BB00
021	5jrg_I_DT21_DC22	BBB	BB00	39	0.32	BB00
022	5jrg_I_DC22_DT23	BBw	BB02	55	0.24	BB02
023	5jrg_I_DT23_DA24	BBB	BB00	16	0.29	BB00
024	5jrg_I_DA24_DC25	BB2	BB08	26	0.35	BB08
025	5jrg_I_DC25_DC26	BBB	BB00	16	0.44	BB00
026	5jrg_I_DA28_DA29	BBB	BB00	29	0.39	BB00
027	5jrg_I_DA29_DA30	B12	BB04	31	0.19	BB04
028	5jrg_I_DA30_DG31	BBB	BB00	95	0.10	BB00
029	5jrg_I_DG31_DT32	BBB	BB00	44	0.16	BB00
030	5jrg_I_DT32_DG33	miB	BB15	81	0.17	BB15
031	5jrg_I_DG33_DT34	miB	BB15	61	0.13	BB15
032	5jrg_I_DT34_DA35	BBB	BB00	11	0.19	BB00
033	5jrg_I_DA35_DT36	BBB	BB00	83	0.23	BB00
034	5jrg_I_DT36_DT37	NAN	NANT	0	0.49	BA05
035	5jrg_I_DT37_DT38	BBB	BB00	23	0.24	BB00
036	5jrg_I_DT38_DG39	BB2	BB07	66	0.29	BB07
037	5jrg_I_DG39_DG40	B12	BB04	23	0.43	BB04
038	5jrg_I_DG40_DA41	NAN	NANT	0	0.53	BB08
039	5jrg_I_DA41_DA42	NAN	NANT	0	0.59	BB15
040	5jrg_I_DA42_DA43	B12	BB04	21	0.34	BB04
041	5jrg_I_DA43_DC44	miB	BB10	47	0.32	BB10
042	5jrg_I_DC44_DT45	miB	BB13	88	0.18	BB13
043	5jrg_I_DT45_DG46	NAN	NANT	0	0.67	BB12
044	5jrg_I_DG46_DC47	NAN	NANT	0	0.60	BB03
045	5jrg_I_DC47_DT48	NAN	NANT	0	0.38	BB08
046	5jrg_I_DT48_DC49	NAN	NANT	0	0.48	BB03
047	5jrg_I_DC49_DC50	BB2	BB07	49	0.34	BB07
048	5jrg_I_DC50_DA51	B12	BB04	77	0.17	BB04
049	5jrg_I_DA51_DT52	BBB	BB00	70	0.20	BB00
050	5jrg_I_DT52_DC53	BBB	BB00	14	0.21	BB00
051	5jrg_I_DC53_DA54	B12	BB04	14	0.23	BB04
052	5jrg_I_DA54_DA55	B12	BB04	46	0.16	BB04
053	5jrg_I_DA55_DA56	NAN	NANT	0	0.54	BB2S
054	5jrg_I_DA56_DA57	NAN	NANT	0	0.60	AAS1
055	5jrg_I_DA57_DG58	BBB	BB00	78	0.42	BB00
056	5jrg_I_DG58_DG59	BB2	BB07	68	0.27	BB07
057	5jrg_I_DG59_DC60	BBB	BB00	71	0.26	BB00
058	5jrg_I_DC60_DA61	B12	BB04	68	0.25	BB04
059	5jrg_I_DA61_DT62	NAN	NANT	0	0.27	BB15
060	5jrg_I_DT62_DG63	BBB	BB00	80	0.23	BB00
061	5jrg_I_DG63_DT64	NAN	NANT	0	0.31	BB15
062	5jrg_I_DT64_DT65	BBB	BB00	73	0.29	BB00
063	5jrg_I_DT65_DC66	BBB	BB00	82	0.18	BB00
064	5jrg_I_DC66_DA67	BB2	BB07	68	0.27	BB07
065	5jrg_I_DA67_DG68	BBB	BB00	72	0.20	BB00
066	5jrg_I_DG68_DC69	BB2	BB07	47	0.26	BB07
067	5jrg_I_DC69_DT70	BBB	BB00	87	0.20	BB00
068	5jrg_I_DT70_DG71	BBB	BB00	86	0.21	BB00
069	5jrg_I_DG71_DA72	B12	BB04	65	0.19	BB04
070	5jrg_I_DA72_DA73	miB	BB15	57	0.27	BB15
071	5jrg_I_DA73_DC74	BBB	BB00	33	0.23	BB00
072	5jrg_I_DC74_DC75	miB	BB15	56	0.22	BB15
073	5jrg_I_DC75_DA76	B12	BB04	62	0.19	BB04
074	5jrg_I_DA76_DG77	BB2	BB07	39	0.27	BB07
075	5jrg_I_DG77_DC78	miB	BB15	34	0.35	BB15
076	5jrg_I_DC78_DT79	BB2	BB07	27	0.20	BB07
077	5jrg_I_DT79_DG80	B12	BB04	45	0.35	BB04
078	5jrg_I_DG80_DA81	B12	BB04	81	0.23	BB04
079	5jrg_I_DA81_DA82	BBB	BB00	82	0.18	BB00
080	5jrg_I_DA82_DC83	BBB	BB00	51	0.22	BB00
081	5jrg_I_DC83_DA84	miB	BB10	37	0.37	BB10
082	5jrg_I_DA84_DT85	BBB	BB00	55	0.24	BB00
083	5jrg_I_DT85_DG86	BBB	BB00	25	0.52	BB00
084	5jrg_I_DG86_DC87	B12	BB04	20	0.26	BB04
085	5jrg_I_DC87_DC88	BB2	BB07	21	0.52	BB07
086	5jrg_I_DC88_DT89	BBB	BB00	65	0.27	BB00
087	5jrg_I_DT89_DT90	BBB	BB00	80	0.24	BB00
088	5jrg_I_DT90_DT91	BBB	BB00	64	0.15	BB00
089	5jrg_I_DT91_DT92	B12	BB04	44	0.45	BB04
090	5jrg_I_DT92_DG93	B12	BB04	72	0.30	BB04
091	5jrg_I_DG93_DA94	NAN	NANT	0	0.36	BB08
092	5jrg_I_DA94_DT95	NAN	NANT	0	0.50	BB10
093	5jrg_I_DT95_DG96	NAN	NANT	0	0.71	BB00
094	5jrg_I_DG96_DG97	BBB	BB00	53	0.32	BB00
095	5jrg_I_DG97_DA98	BB2	BB07	46	0.32	BB07
096	5jrg_I_DA98_DG99	BBB	BB00	46	0.29	BB00
097	5jrg_I_DG99_DC100	NAN	NANT	0	0.44	BB08
098	5jrg_I_DC100_DA101	BBB	BB00	60	0.46	BB00
099	5jrg_I_DA101_DG102	B12	BB04	51	0.16	BB04
100	5jrg_I_DG102_DT103	BBw	BB02	74	0.21	BB02
101	5jrg_I_DT103_DT104	miB	BB15	53	0.15	BB15
102	5jrg_I_DT104_DT105	B12	BB04	30	0.44	BB04
103	5jrg_I_DT105_DC106	B12	BB04	61	0.28	BB04
104	5jrg_I_DC106_DC107	BB2	BB08	36	0.28	BB08
105	5jrg_I_DC107_DA108	BB2	BB07	35	0.50	BB07
106	5jrg_I_DA108_DA109	BBB	BB00	31	0.28	BB00
107	5jrg_I_DA109_DA110	B-A	BA08	57	0.26	BA08
108	5jrg_I_DA110_DT111	A-B	AB05	79	0.24	AB05
109	5jrg_I_DT111_DA112	miB	BB15	67	0.30	BB15
110	5jrg_I_DA112_DC113	BBB	BB00	68	0.22	BB00
111	5jrg_I_DC113_DA114	NAN	NANT	0	0.32	BB15
112	5jrg_I_DA114_DC115	BBB	BB00	29	0.18	BB00
113	5jrg_I_DC115_DT116	B12	BB04	72	0.25	BB04
114	5jrg_I_DT118_DT119	miB	BB15	50	0.34	BB15
115	5jrg_I_DT119_DG120	B12	BB04	47	0.27	BB04
116	5jrg_I_DG120_DG121	BBB	BB00	85	0.15	BB00
117	5jrg_I_DG121_DT122	BBB	BB00	83	0.15	BB00
118	5jrg_I_DT122_DA123	B12	BB04	40	0.37	BB04
119	5jrg_I_DA123_DG124	BBw	BB11	72	0.36	BB11
120	5jrg_I_DG124_DA125	BBB	BB00	58	0.28	BB00
121	5jrg_I_DA125_DA126	miB	BB15	46	0.34	BB15
122	5jrg_I_DA126_DT127	miB	BB13	41	0.27	BB13
123	5jrg_I_DT127_DC128	BBw	BB02	15	0.56	BB02
124	5jrg_I_DC128_DT129	NAN	NANT	0	0.49	BB10
125	5jrg_I_DT129_DG130	NAN	NANT	0	0.61	BB08
126	5jrg_I_DG130_DC131	miB	BB15	20	0.46	BB15
127	5jrg_I_DC131_DA132	BB2	BB07	34	0.22	BB07
128	5jrg_I_DA132_DG133	miB	BB15	23	0.28	BB15
129	5jrg_I_DG133_DG134	miB	BB15	46	0.25	BB15
130	5jrg_I_DG134_DT135	BBw	BB02	69	0.22	BB02
131	5jrg_I_DT135_DG136	B12	BB04	28	0.40	BB04
132	5jrg_I_DG136_DG137	B12	BB04	73	0.25	BB04
133	5jrg_I_DG137_DA138	BBB	BB00	79	0.28	BB00
134	5jrg_I_DA138_DT139	miB	BB15	47	0.28	BB15
135	5jrg_I_DT139_DA140	BBB	BB00	91	0.16	BB00
136	5jrg_I_DA140_DT141	BBB	BB00	81	0.22	BB00
137	5jrg_I_DT141_DT142	BBB	BB00	72	0.21	BB00
138	5jrg_I_DT142_DG143	BBB	BB00	83	0.21	BB00
139	5jrg_I_DG143_DA144	B12	BB04	82	0.12	BB04
140	5jrg_I_DA144_DT145	BBw	BB02	43	0.28	BB02
141	5jrg_J_DA1_DT2	BBw	BB03	56	0.30	BB03
142	5jrg_J_DT2_DC3	BBw	BB02	18	0.45	BB02
143	5jrg_J_DC3_DA4	NAN	NANT	0	0.58	BB05
144	5jrg_J_DA4_DA5	BBB	BB00	20	0.33	BB00
145	5jrg_J_DA5_DT6	NAN	NANT	0	0.52	BB02
146	5jrg_J_DT6_DA7	BBB	BB00	66	0.32	BB00
147	5jrg_J_DA7_DT8	BBB	BB00	70	0.25	BB00
148	5jrg_J_DT8_DC9	BBB	BB00	26	0.23	BB00
149	5jrg_J_DC9_DC10	miB	BB10	53	0.36	BB10
150	5jrg_J_DC10_DA11	BB2	BB08	59	0.20	BB08
151	5jrg_J_DA11_DC12	miB	BB15	44	0.39	BB15
152	5jrg_J_DC12_DC13	BBw	BB02	18	0.34	BB02
153	5jrg_J_DC13_DT14	BBB	BB00	19	0.35	BB00
154	5jrg_J_DT14_DG15	miB	BB15	40	0.44	BB15
155	5jrg_J_DG15_DC16	NAN	NANT	0	0.36	BB15
156	5jrg_J_DC16_DA17	BB2	BB07	68	0.31	BB07
157	5jrg_J_DA17_DG18	B12	BB04	44	0.31	BB04
158	5jrg_J_DG18_DA19	B12	BB04	84	0.17	BB04
159	5jrg_J_DA19_DT20	BBw	BB02	61	0.25	BB02
160	5jrg_J_DT20_DT21	BBB	BB00	36	0.26	BB00
161	5jrg_J_DT21_DC22	BBB	BB00	37	0.34	BB00
162	5jrg_J_DC22_DT23	BBw	BB02	42	0.25	BB02
163	5jrg_J_DT23_DA24	NAN	NANT	0	0.36	BB15
164	5jrg_J_DA24_DC25	BB2	BB08	23	0.36	BB08
165	5jrg_J_DC25_DC26	BBB	BB00	19	0.48	BB00
166	5jrg_J_DC26_DA27	BB2	BB08	41	0.35	BB08
167	5jrg_J_DA27_DA28	BBB	BB00	52	0.33	BB00
168	5jrg_J_DA28_DA29	BBB	BB00	30	0.29	BB00
169	5jrg_J_DA29_DA30	B12	BB04	11	0.27	BB04
170	5jrg_J_DA30_DG31	BBB	BB00	95	0.10	BB00
171	5jrg_J_DG31_DT32	BBB	BB00	32	0.21	BB00
172	5jrg_J_DT32_DG33	miB	BB15	73	0.21	BB15
173	5jrg_J_DG33_DT34	miB	BB15	61	0.14	BB15
174	5jrg_J_DT34_DA35	BBB	BB00	12	0.29	BB00
175	5jrg_J_DA35_DT36	NAN	NANT	0	0.39	BA10
176	5jrg_J_DT36_DT37	BBB	BB00	66	0.27	BB00
177	5jrg_J_DT37_DT38	BBB	BB00	32	0.23	BB00
178	5jrg_J_DT38_DG39	BB2	BB07	40	0.35	BB07
179	5jrg_J_DG39_DG40	BBB	BB00	17	0.29	BB00
180	5jrg_J_DG40_DA41	NAN	NANT	0	0.28	BB07
181	5jrg_J_DA41_DA42	miB	BB15	43	0.21	BB15
182	5jrg_J_DA42_DA43	B12	BB04	24	0.34	BB04
183	5jrg_J_DA43_DC44	NAN	NANT	0	0.34	BB13
184	5jrg_J_DC44_DT45	BBB	BB00	44	0.45	BB00
185	5jrg_J_DT45_DG46	BB2	BB07	14	0.29	BB07
186	5jrg_J_DG46_DC47	BBB	BB00	62	0.29	BB00
187	5jrg_J_DC47_DT48	NAN	NANT	0	0.43	BB08
188	5jrg_J_DT48_DC49	NAN	NANT	0	0.63	BB15
189	5jrg_J_DC49_DC50	BB2	BB07	63	0.29	BB07
190	5jrg_J_DC50_DA51	B12	BB04	65	0.28	BB04
191	5jrg_J_DA51_DT52	BBB	BB00	50	0.27	BB00
192	5jrg_J_DT52_DC53	BBB	BB00	24	0.27	BB00
193	5jrg_J_DC53_DA54	B12	BB04	11	0.30	BB04
194	5jrg_J_DA54_DA55	B12	BB04	51	0.27	BB04
195	5jrg_J_DA55_DA56	NAN	NANT	0	0.42	BA10
196	5jrg_J_DA56_DA57	A-B	AB03	71	0.28	AB03
197	5jrg_J_DA57_DG58	BBB	BB00	96	0.12	BB00
198	5jrg_J_DG58_DG59	BB2	BB08	29	0.51	BB08
199	5jrg_J_DG59_DC60	BBB	BB00	45	0.33	BB00
200	5jrg_J_DC60_DA61	BBB	BB00	61	0.23	BB00
201	5jrg_J_DA61_DT62	NAN	NANT	0	0.25	BB15
202	5jrg_J_DT62_DG63	BBB	BB00	70	0.33	BB00
203	5jrg_J_DG63_DT64	NAN	NANT	0	0.27	BB15
204	5jrg_J_DT64_DT65	BBB	BB00	82	0.20	BB00
205	5jrg_J_DT65_DC66	BBB	BB00	82	0.24	BB00
206	5jrg_J_DC66_DA67	BB2	BB07	71	0.30	BB07
207	5jrg_J_DA67_DG68	BBB	BB00	63	0.24	BB00
208	5jrg_J_DG68_DC69	BB2	BB07	45	0.26	BB07
209	5jrg_J_DC69_DT70	BBB	BB00	86	0.19	BB00
210	5jrg_J_DT70_DG71	BBB	BB00	86	0.21	BB00
211	5jrg_J_DG71_DG72	B12	BB04	91	0.11	BB04
212	5jrg_J_DG72_DT73	miB	BB15	55	0.21	BB15
213	5jrg_J_DT73_DT74	BBB	BB00	40	0.20	BB00
214	5jrg_J_DT74_DC75	BBB	BB00	34	0.24	BB00
215	5jrg_J_DC75_DA76	BB2	BB07	64	0.22	BB07
216	5jrg_J_DA76_DG77	BB2	BB07	61	0.17	BB07
217	5jrg_J_DG77_DC78	miB	BB15	32	0.41	BB15
218	5jrg_J_DC78_DT79	BB2	BB07	24	0.23	BB07
219	5jrg_J_DT79_DG80	B12	BB04	39	0.43	BB04
220	5jrg_J_DG80_DA81	B12	BB04	70	0.29	BB04
221	5jrg_J_DA81_DA82	BBB	BB00	76	0.16	BB00
222	5jrg_J_DA82_DC83	BBB	BB00	43	0.26	BB00
223	5jrg_J_DC83_DA84	miB	BB10	34	0.40	BB10
224	5jrg_J_DA84_DT85	BBB	BB00	61	0.26	BB00
225	5jrg_J_DT85_DG86	BBB	BB00	24	0.48	BB00
226	5jrg_J_DG86_DC87	BB2	BB07	39	0.27	BB07
227	5jrg_J_DC87_DC88	BBB	BB00	67	0.22	BB00
228	5jrg_J_DC88_DT89	B12	BB04	84	0.18	BB04
229	5jrg_J_DT89_DT90	BBB	BB00	83	0.20	BB00
230	5jrg_J_DT90_DT91	BBB	BB00	71	0.17	BB00
231	5jrg_J_DT91_DT92	B12	BB04	48	0.43	BB04
232	5jrg_J_DT92_DG93	BBB	BB00	58	0.24	BB00
233	5jrg_J_DG93_DA94	NAN	NANT	0	0.42	BB08
234	5jrg_J_DA94_DT95	NAN	NANT	0	0.62	BB13
235	5jrg_J_DT95_DG96	BBw	BB16	22	0.57	BB16
236	5jrg_J_DG96_DG97	BBB	BB00	68	0.23	BB00
237	5jrg_J_DG97_DA98	BB2	BB07	43	0.34	BB07
238	5jrg_J_DA98_DG99	BBB	BB00	48	0.27	BB00
239	5jrg_J_DG99_DC100	NAN	NANT	0	0.46	BB08
240	5jrg_J_DC100_DA101	BBB	BB00	65	0.43	BB00
241	5jrg_J_DA101_DG102	B12	BB04	54	0.12	BB04
242	5jrg_J_DG102_DT103	BBw	BB02	68	0.27	BB02
243	5jrg_J_DT103_DT104	miB	BB15	53	0.22	BB15
244	5jrg_J_DT104_DT105	B12	BB04	43	0.34	BB04
245	5jrg_J_DT105_DC106	BBw	BB11	40	0.38	BB11
246	5jrg_J_DC106_DC107	BB2	BB07	36	0.35	BB07
247	5jrg_J_DC107_DA108	BB2	BB07	69	0.29	BB07
248	5jrg_J_DA108_DA109	BBB	BB00	44	0.20	BB00
249	5jrg_J_DA109_DA110	B-A	BA08	73	0.22	BA08
250	5jrg_J_DA110_DT111	A-B	AB05	89	0.20	AB05
251	5jrg_J_DT111_DA112	miB	BB15	71	0.25	BB15
252	5jrg_J_DA112_DC113	BBB	BB00	76	0.25	BB00
253	5jrg_J_DC113_DA114	miB	BB15	29	0.32	BB15
254	5jrg_J_DA114_DC115	BBB	BB00	23	0.17	BB00
255	5jrg_J_DC115_DT116	B12	BB04	64	0.30	BB04
256	5jrg_J_DT118_DT119	miB	BB15	59	0.42	BB15
257	5jrg_J_DT119_DG120	B12	BB04	28	0.45	BB04
258	5jrg_J_DG120_DG121	BBB	BB00	75	0.19	BB00
259	5jrg_J_DG121_DT122	BBB	BB00	79	0.24	BB00
260	5jrg_J_DT122_DA123	B12	BB04	61	0.26	BB04
261	5jrg_J_DA123_DG124	miB	BB13	55	0.31	BB13
262	5jrg_J_DG124_DA125	BBB	BB00	49	0.31	BB00
263	5jrg_J_DA125_DA126	miB	BB15	45	0.30	BB15
264	5jrg_J_DA126_DT127	miB	BB13	42	0.24	BB13
265	5jrg_J_DT127_DC128	miB	BB15	23	0.41	BB15
266	5jrg_J_DC128_DT129	NAN	NANT	0	0.31	BB10
267	5jrg_J_DT129_DG130	NAN	NANT	0	0.52	BB08
268	5jrg_J_DG130_DC131	NAN	NANT	0	0.53	BB15
269	5jrg_J_DC131_DA132	BB2	BB07	72	0.21	BB07
270	5jrg_J_DA132_DG133	miB	BB15	16	0.41	BB15
271	5jrg_J_DG133_DG134	miB	BB15	24	0.36	BB15
272	5jrg_J_DG134_DT135	BBw	BB02	75	0.17	BB02
273	5jrg_J_DT135_DG136	NAN	NANT	0	0.36	BB04
274	5jrg_J_DG136_DG137	B12	BB04	79	0.19	BB04
275	5jrg_J_DG137_DA138	BBB	BB00	81	0.35	BB00
276	5jrg_J_DA138_DT139	miB	BB15	49	0.27	BB15
277	5jrg_J_DT139_DA140	BBB	BB00	91	0.18	BB00
278	5jrg_J_DA140_DT141	BBB	BB00	81	0.16	BB00
279	5jrg_J_DT141_DT142	BBB	BB00	73	0.18	BB00
280	5jrg_J_DT142_DG143	BBB	BB00	79	0.24	BB00
281	5jrg_J_DG143_DA144	B12	BB04	86	0.10	BB04
282	5jrg_J_DA144_DT145	BBw	BB02	41	0.26	BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

Results of the assignment of 282 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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