DNATCO v4.1: results

SigmaS-transcription initiation complex with 4-nt nascent RNA

Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5ipn_1_DC27_DA28	BBB	BB00	36	0.26	BB00
02	5ipn_1_DA28_DC29	BBB	BB00	65	0.28	BB00
03	5ipn_1_DC29_DG30	BBB	BB00	42	0.22	BB00
04	5ipn_1_DG30_DT31	BBB	BB00	67	0.21	BB00
05	5ipn_1_DT31_DA32	BBw	BB02	24	0.27	BB02
06	5ipn_1_DA32_DT33	BBB	BB00	45	0.31	BB00
07	5ipn_1_DT33_DG34	BBw	BB02	20	0.22	BB02
08	5ipn_1_DG34_DC35	B12	BB04	63	0.29	BB04
09	5ipn_1_DC35_DT36	B12	BB04	26	0.23	BB04
10	5ipn_1_DT36_DA37	OPN	OP20	55	0.41	OP20
11	5ipn_1_DA37_DT38	NAN	NANT	0	0.81	OP13
12	5ipn_1_DT38_DA39	BBB	BB00	37	0.54	BB00
13	5ipn_1_DA39_DA40	BBB	BB00	68	0.20	BB00
14	5ipn_1_DA40_DT41	NAN	NANT	0	0.67	OP20
15	5ipn_1_DT41_DG42	NAN	NANT	0	2.28	OP19
16	5ipn_1_DG42_DT43	NAN	NANT	0	0.90	OP22
17	5ipn_1_DT43_DG44	NAN	NANT	0	0.76	BB00
18	5ipn_1_DG44_DT45	NAN	NANT	0	1.73	BA09
19	5ipn_1_DT45_DG46	NAN	NANT	0	1.21	BA16
20	5ipn_1_DG46_DC47	NAN	NANT	0	0.80	BB13
21	5ipn_1_DC47_DA48	NAN	NANT	0	0.59	BB10
22	5ipn_1_DA48_DG49	NAN	NANT	0	0.78	BA09
23	5ipn_1_DG49_DT50	NAN	NANT	0	0.90	AB02
24	5ipn_1_DT50_DC51	NAN	NANT	0	1.57	OP11
25	5ipn_1_DC51_DT52	BBB	BB00	15	0.45	BB00
26	5ipn_1_DT52_DG53	B12	BB04	89	0.25	BB04
27	5ipn_1_DG53_DA54	BBw	BB02	57	0.18	BB02
28	5ipn_1_DA54_DC55	BBB	BB00	72	0.15	BB00
29	5ipn_1_DC55_DG56	B12	BB05	21	0.43	BB05
30	5ipn_1_DG56_DC57	BBB	BB00	70	0.26	BB00
31	5ipn_1_DC57_DG58	NAN	NANT	0	0.63	BB03
32	5ipn_1_DG58_DG59	NAN	NANT	0	0.46	BB11
33	5ipn_2_DC4_DC5	NAN	NANT	0	0.58	BB02
34	5ipn_2_DC5_DG6	BBB	BB00	25	0.35	BB00
35	5ipn_2_DG6_DC7	B-A	BA08	37	0.33	BA08
36	5ipn_2_DC7_DG8	BBB	BB00	13	0.31	BB00
37	5ipn_2_DG8_DT9	miB	BB15	63	0.20	BB15
38	5ipn_2_DT9_DC10	B-A	BA05	42	0.36	BA05
39	5ipn_2_DC10_DA11	AAw	AA01	12	0.51	AA01
40	5ipn_2_DA11_DG12	AAA	AA08	37	0.29	AA08
41	5ipn_2_DG12_DA13	NAN	NANT	0	1.40	OP05
42	5ipn_2_DA13_DC14	AAA	AA00	58	0.27	AA00
43	5ipn_2_DC14_DT15	AAw	AA06	28	0.24	AA06
44	5ipn_2_DT15_DC16	NAN	NANT	0	0.56	AA05
45	5ipn_2_DC16_DG17	NAN	NANT	0	0.69	AA11
46	5ipn_2_DG17_DT18	NAN	NANT	0	0.35	AA03
47	5ipn_2_DT18_DA19	AAA	AA09	64	0.30	AA09
48	5ipn_2_DA19_DG20	NAN	NANT	0	1.02	BB02
49	5ipn_2_DG20_DG21	BBw	BB02	16	0.37	BB02
50	5ipn_2_DG21_DA22	NAN	NANT	0	0.92	BB00
51	5ipn_2_DT23_DT24	NAN	NANT	0	0.33	BB02
52	5ipn_2_DT24_DA25	NAN	NANT	0	0.39	BB10
53	5ipn_2_DA25_DT26	B-A	BA16	10	0.43	BA16
54	5ipn_2_DT26_DA27	NAN	NANT	0	0.77	OP28
55	5ipn_2_DA27_DG28	BBB	BB00	66	0.47	BB00
56	5ipn_2_DG28_DC29	BBB	BB00	83	0.27	BB00
57	5ipn_2_DC29_DA30	BBB	BB00	81	0.31	BB00
58	5ipn_2_DA30_DT31	BBB	BB00	81	0.23	BB00
59	5ipn_2_DT31_DA32	BBB	BB00	72	0.24	BB00
60	5ipn_2_DA32_DC33	BBB	BB00	84	0.24	BB00
61	5ipn_2_DC33_DG34	BBB	BB00	77	0.23	BB00
62	5ipn_2_DG34_DT35	BBB	BB00	27	0.37	BB00
63	5ipn_2_DT35_DG36	B12	BB04	65	0.31	BB04
64	5ipn_3_GTP14_A15	AAu	AA12	49	0.39	AA12
65	5ipn_3_A15_G16	NAN	NANT	0	0.57	AA10
66	5ipn_3_G16_U17	NAN	NANT	0	0.59	AA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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