DNATCO v4.1: results

SigmaS-transcription initiation complex with 4-nt nascent RNA

Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5ipl_1_DC27_DA28	BBB	BB00	47	0.21	BB00
02	5ipl_1_DA28_DC29	BBB	BB00	61	0.29	BB00
03	5ipl_1_DC29_DG30	BBB	BB00	41	0.23	BB00
04	5ipl_1_DG30_DT31	BBB	BB00	63	0.20	BB00
05	5ipl_1_DT31_DA32	BBw	BB02	15	0.24	BB02
06	5ipl_1_DA32_DT33	BBB	BB00	48	0.30	BB00
07	5ipl_1_DT33_DG34	BBw	BB02	20	0.23	BB02
08	5ipl_1_DG34_DC35	B12	BB04	14	0.33	BB04
09	5ipl_1_DC35_DT36	BBB	BB00	55	0.29	BB00
10	5ipl_1_DT36_DA37	OPN	OP20	44	0.41	OP20
11	5ipl_1_DA37_DT38	NAN	NANT	0	0.95	OP14
12	5ipl_1_DT38_DA39	BBB	BB00	42	0.49	BB00
13	5ipl_1_DA39_DA40	BBB	BB00	90	0.17	BB00
14	5ipl_1_DA40_DT41	NAN	NANT	0	0.62	OP20
15	5ipl_1_DT41_DG42	NAN	NANT	0	2.29	OP19
16	5ipl_1_DG42_DT43	NAN	NANT	0	0.94	OP22
17	5ipl_1_DT43_DG44	NAN	NANT	0	0.74	BB00
18	5ipl_1_DG44_DT45	NAN	NANT	0	1.67	BA09
19	5ipl_1_DT45_DG46	NAN	NANT	0	1.26	AA11
20	5ipl_1_DG46_DC47	NAN	NANT	0	0.78	BB13
21	5ipl_1_DC47_DA48	NAN	NANT	0	0.67	BB10
22	5ipl_1_DA48_DG49	NAN	NANT	0	0.77	BA09
23	5ipl_1_DG49_DT50	NAN	NANT	0	1.03	AB02
24	5ipl_1_DT50_DC51	NAN	NANT	0	1.67	OP11
25	5ipl_1_DC51_DT52	BBB	BB00	24	0.37	BB00
26	5ipl_1_DT52_DG53	B12	BB04	70	0.26	BB04
27	5ipl_1_DG53_DA54	BBw	BB02	57	0.18	BB02
28	5ipl_1_DA54_DC55	BBB	BB00	68	0.17	BB00
29	5ipl_1_DC55_DG56	B12	BB05	24	0.40	BB05
30	5ipl_1_DG56_DC57	BBB	BB00	61	0.29	BB00
31	5ipl_1_DC57_DG58	NAN	NANT	0	0.64	BB03
32	5ipl_1_DG58_DG59	NAN	NANT	0	0.54	BA10
33	5ipl_2_DC4_DC5	NAN	NANT	0	0.57	BB02
34	5ipl_2_DC5_DG6	BBB	BB00	20	0.36	BB00
35	5ipl_2_DG6_DC7	B-A	BA08	32	0.32	BA08
36	5ipl_2_DC7_DG8	BBB	BB00	27	0.29	BB00
37	5ipl_2_DG8_DT9	miB	BB15	53	0.18	BB15
38	5ipl_2_DT9_DC10	B-A	BA05	37	0.37	BA05
39	5ipl_2_DC10_DA11	NAN	NANT	0	0.52	AA01
40	5ipl_2_DA11_DG12	AAA	AA08	57	0.27	AA08
41	5ipl_2_DG12_DA13	NAN	NANT	0	0.79	OP06
42	5ipl_2_DA13_DC14	AAA	AA00	56	0.28	AA00
43	5ipl_2_DC14_DT15	AAw	AA06	36	0.22	AA06
44	5ipl_2_DT15_DC16	NAN	NANT	0	0.53	AA06
45	5ipl_2_DC16_DG17	NAN	NANT	0	0.52	AA06
46	5ipl_2_DG17_DT18	AAA	AA03	11	0.34	AA03
47	5ipl_2_DT18_DA19	AAA	AA09	69	0.29	AA09
48	5ipl_2_DA19_DG20	NAN	NANT	0	1.03	BB02
49	5ipl_2_DG20_DG21	NAN	NANT	0	0.42	BB02
50	5ipl_2_DG21_DA22	NAN	NANT	0	1.04	BB00
51	5ipl_2_DA22_DT23	NAN	NANT	0	0.61	BB15
52	5ipl_2_DT23_DT24	BBw	BB02	16	0.35	BB02
53	5ipl_2_DT24_DA25	NAN	NANT	0	0.38	BB10
54	5ipl_2_DA25_DT26	B-A	BA16	16	0.41	BA16
55	5ipl_2_DT26_DA27	NAN	NANT	0	0.93	OP28
56	5ipl_2_DA27_DG28	BBB	BB00	71	0.42	BB00
57	5ipl_2_DG28_DC29	BBB	BB00	78	0.29	BB00
58	5ipl_2_DC29_DA30	BBB	BB00	79	0.28	BB00
59	5ipl_2_DA30_DT31	BBB	BB00	78	0.16	BB00
60	5ipl_2_DT31_DA32	BBB	BB00	77	0.23	BB00
61	5ipl_2_DA32_DC33	BBB	BB00	89	0.27	BB00
62	5ipl_2_DC33_DG34	BBB	BB00	62	0.27	BB00
63	5ipl_2_DG34_DT35	BBB	BB00	10	0.41	BB00
64	5ipl_2_DT35_DG36	B12	BB04	54	0.34	BB04
65	5ipl_3_GTP14_A15	AAu	AA12	41	0.43	AA12
66	5ipl_3_A15_G16	NAN	NANT	0	0.66	AA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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