Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
The crystal structure of Se-AsfvPolX(L52/163M mutant) in complex with 1nt-gap DNA1

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015hr9_C_DG1_DG2NANNANT00.69 BB14
025hr9_C_DG2_DA3BBBBB00380.28 BB00
035hr9_C_DA3_DC4B-ABA10910.23 BA10
045hr9_C_DC4_DA5A-BAB05780.15 AB05
055hr9_C_DA5_DA6BBBBB00810.20 BB00
065hr9_C_DA6_DC7BBBBB01620.19 BB01
075hr9_C_DC7_DG8BBBBB00310.40 BB00
085hr9_C_DG8_DG9NANNANT00.73 BB08
095hr9_C_DG9_DG10BBBBB00860.17 BB00
105hr9_C_DG10_DA11B12BB04930.11 BB04
115hr9_C_DA11_DC12BBBBB01860.22 BB01
125hr9_C_DC12_DA13BBBBB00280.26 BB00
135hr9_C_DA13_DA14NANNANT00.55 BA08
145hr9_C_DA14_DC15AAAAA08590.36 AA08
155hr9_D_DG1_DT2BBBBB01640.24 BB01
165hr9_D_DT2_DT3BBBBB00480.27 BB00
175hr9_D_DT3_DG4BBBBB00470.37 BB00
185hr9_D_DG4_DT5BBBBB00670.20 BB00
195hr9_D_DT5_DC6B-ABA05300.31 BA05
205hr9_D_DC6_DC7A-BAB01630.14 AB01
215hr9_E_DG9_DT10AAAAA08440.41 AA08
225hr9_E_DT10_DT11A-BAB01850.26 AB01
235hr9_E_DT11_DG12BBBBB01830.14 BB01
245hr9_E_DG12_DT13miBBB10480.25 BB10
255hr9_E_DT13_DC14B-ABA13480.21 BA13
265hr9_E_DC14_DC15AAAAA08660.24 AA08
275hr9_F_DG1_DG2NANNANT00.60 AB04
285hr9_F_DG2_DA3NANNANT00.85 BA09
295hr9_F_DA3_DC4NANNANT00.81 AB02
305hr9_F_DC4_DA5B-ABA09670.33 BA09
315hr9_F_DA5_DA6NANNANT01.14 AA10
325hr9_F_DA6_DC7BBBBB00500.46 BB00
335hr9_F_DC7_DG8NANNANT00.43 BB10
345hr9_F_DG8_DG9NANNANT00.53 BB08
355hr9_F_DG9_DG10BBBBB00630.34 BB00
365hr9_F_DG10_DA11BBBBB00520.37 BB00
375hr9_F_DA11_DC12B-ABA05910.21 BA05
385hr9_F_DC12_DA13BBBBB01290.31 BB01
395hr9_F_DA13_DA14NANNANT00.71 AA04
405hr9_F_DA14_DC15AAAAA08570.34 AA08
415hr9_G_DG1_DT2BBBBB01550.26 BB01
425hr9_G_DT2_DT3BBBBB01720.26 BB01
435hr9_G_DT3_DG4BBBBB00540.38 BB00
445hr9_G_DG4_DT5BBBBB01740.20 BB01
455hr9_G_DT5_DC6B-ABA05560.28 BA05
465hr9_G_DC6_DC7NANNANT00.39 AA02
475hr9_H_DG9_DT10AAAAA08350.35 AA08
485hr9_H_DT10_DT11AAAAA08930.27 AA08
495hr9_H_DT11_DG12AAAAA00850.23 AA00
505hr9_H_DG12_DT13NANNANT00.56 AA01
515hr9_H_DT13_DC14NANNANT00.76 BA10
525hr9_H_DC14_DC15NANNANT00.46 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N