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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of complex between DMAP-SH conjugated with a Kaposi's sarcoma herpesvirus LANA peptide (5-15) and nucleosome core particle

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015gtc_I_DA1_DT2BBwBB03850.32 BB03
0025gtc_I_DT2_DC3BBwBB02480.41 BB02
0035gtc_I_DC3_DA4BBwBB11450.34 BB11
0045gtc_I_DA4_DA5miBBB15650.32 BB15
0055gtc_I_DA5_DT6BBwBB02130.29 BB02
0065gtc_I_DT6_DA7BBBBB00740.20 BB00
0075gtc_I_DA7_DT8miBBB15810.19 BB15
0085gtc_I_DT8_DC9miBBB15820.23 BB15
0095gtc_I_DC9_DC10NANNANT00.36 BB02
0105gtc_I_DC10_DA11NANNANT00.49 BB15
0115gtc_I_DA11_DC12miBBB15680.34 BB15
0125gtc_I_DC12_DC13BBwBB02610.30 BB02
0135gtc_I_DC13_DT14BBBBB00460.25 BB00
0145gtc_I_DT14_DG15B12BB04600.36 BB04
0155gtc_I_DG15_DC16NANNANT00.24 BB15
0165gtc_I_DC16_DA17BB2BB07340.37 BB07
0175gtc_I_DA17_DG18BBBBB00530.30 BB00
0185gtc_I_DG18_DA19NANNANT00.41 BB13
0195gtc_I_DA19_DT20BBwBB02310.46 BB02
0205gtc_I_DT20_DT21miBBB15640.27 BB15
0215gtc_I_DT21_DC22BBBBB00690.20 BB00
0225gtc_I_DC22_DT23BBwBB02560.25 BB02
0235gtc_I_DT23_DA24BBBBB00170.21 BB00
0245gtc_I_DA24_DC25NANNANT00.49 BB03
0255gtc_I_DC25_DC26BBBBB00380.29 BB00
0265gtc_I_DC26_DA27NANNANT00.39 BB07
0275gtc_I_DA27_DA28BBBBB00630.20 BB00
0285gtc_I_DA28_DA29BB2BB08820.30 BB08
0295gtc_I_DA29_DA30BBBBB00590.29 BB00
0305gtc_I_DA30_DG31BBBBB00870.15 BB00
0315gtc_I_DG31_DT32BBwBB02770.21 BB02
0325gtc_I_DT32_DG33BBBBB00670.20 BB00
0335gtc_I_DG33_DT34BBwBB03450.45 BB03
0345gtc_I_DT34_DA35BBBBB00550.27 BB00
0355gtc_I_DA35_DT36NANNANT00.58 BA10
0365gtc_I_DT36_DT37NANNANT00.50 BB02
0375gtc_I_DT37_DT38NANNANT00.41 BB10
0385gtc_I_DT38_DG39BBBBB00540.42 BB00
0395gtc_I_DG39_DG40NANNANT00.48 BB08
0405gtc_I_DG40_DA41NANNANT00.61 BB15
0415gtc_I_DA41_DA42NANNANT00.22 BB03
0425gtc_I_DA42_DA43BBwBB02130.36 BB02
0435gtc_I_DA43_DC44NANNANT00.55 BA10
0445gtc_I_DC44_DT45miBBB13710.21 BB13
0455gtc_I_DT45_DG46NANNANT00.90 BB08
0465gtc_I_DG46_DC47BBwBB02630.28 BB02
0475gtc_I_DC47_DT48BB2BB08550.55 BB08
0485gtc_I_DT48_DC49BBwBB02270.39 BB02
0495gtc_I_DC49_DC50BBBBB00370.26 BB00
0505gtc_I_DC50_DA51BBBBB00170.16 BB00
0515gtc_I_DA51_DT52NANNANT00.51 BB02
0525gtc_I_DT52_DC53NANNANT00.49 BB02
0535gtc_I_DC53_DA54NANNANT00.41 BB10
0545gtc_I_DA54_DA55miBBB12280.48 BB12
0555gtc_I_DA55_DA56NANNANT00.62 BB03
0565gtc_I_DA56_DA57BBBBB00730.24 BB00
0575gtc_I_DA57_DG58NANNANT00.63 BB13
0585gtc_I_DG58_DG59NANNANT00.50 BB04
0595gtc_I_DG59_DC60BBBBB00460.28 BB00
0605gtc_I_DC60_DA61B12BB04470.18 BB04
0615gtc_I_DA61_DT62BBwBB02720.24 BB02
0625gtc_I_DT62_DG63miBBB15740.31 BB15
0635gtc_I_DG63_DT64miBBB15650.28 BB15
0645gtc_I_DT64_DT65BBwBB02340.35 BB02
0655gtc_I_DT65_DC66BBBBB00240.29 BB00
0665gtc_I_DC66_DA67BB2BB07850.16 BB07
0675gtc_I_DA67_DG68BBBBB00540.32 BB00
0685gtc_I_DG68_DC69BB2BB07190.27 BB07
0695gtc_I_DC69_DT70BB2BB07410.25 BB07
0705gtc_I_DT70_DG71BBBBB00350.17 BB00
0715gtc_I_DG71_DA72BBBBB00780.24 BB00
0725gtc_I_DA72_DA73miBBB15740.23 BB15
0735gtc_I_DA73_DT74BBwBB02610.28 BB02
0745gtc_I_DT74_DT75miBBB15800.14 BB15
0755gtc_I_DT75_DC76BBBBB00560.14 BB00
0765gtc_I_DC76_DA77BB2BB07560.19 BB07
0775gtc_I_DA77_DG78B12BB04160.49 BB04
0785gtc_I_DG78_DC79BB2BB07710.21 BB07
0795gtc_I_DC79_DT80B12BB04360.41 BB04
0805gtc_I_DT80_DG81B12BB04570.25 BB04
0815gtc_I_DG81_DA82BBBBB00720.15 BB00
0825gtc_I_DA82_DA83miBBB15760.18 BB15
0835gtc_I_DA83_DC84NANNANT00.35 BB02
0845gtc_I_DC84_DA85B12BB04360.24 BB04
0855gtc_I_DA85_DT86BBwBB02610.19 BB02
0865gtc_I_DT86_DG87BBBBB00530.24 BB00
0875gtc_I_DG87_DC88BB2BB07630.39 BB07
0885gtc_I_DC88_DC89BBBBB00640.22 BB00
0895gtc_I_DC89_DT90BB2BB07830.15 BB07
0905gtc_I_DT90_DT91BBBBB00140.14 BB00
0915gtc_I_DT91_DT92BBwBB02520.24 BB02
0925gtc_I_DT92_DT93NANNANT00.28 BB15
0935gtc_I_DT93_DG94NANNANT00.22 BB15
0945gtc_I_DG94_DA95BBBBB00500.25 BB00
0955gtc_I_DA95_DT96BBwBB02230.31 BB02
0965gtc_I_DT96_DG97BBBBB00160.30 BB00
0975gtc_I_DG97_DG98BBBBB00660.28 BB00
0985gtc_I_DG98_DA99BB2BB07700.16 BB07
0995gtc_I_DA99_DG100B12BB04370.47 BB04
1005gtc_I_DG100_DC101BB2BB08760.29 BB08
1015gtc_I_DC101_DA102NANNANT00.60 BB15
1025gtc_I_DA102_DG103NANNANT00.41 BB15
1035gtc_I_DG103_DT104BBwBB02600.22 BB02
1045gtc_I_DT104_DT105BBwBB02430.25 BB02
1055gtc_I_DT105_DT106NANNANT00.43 BB02
1065gtc_I_DT106_DC107BBBBB00130.27 BB00
1075gtc_I_DC107_DC108BBwBB11470.47 BB11
1085gtc_I_DC108_DA109B12BB04450.49 BB04
1095gtc_I_DA109_DA110BBBBB00770.21 BB00
1105gtc_I_DA110_DA111BBBBB00740.23 BB00
1115gtc_I_DA111_DT112miBBB15300.36 BB15
1125gtc_I_DT112_DA113BBBBB00290.16 BB00
1135gtc_I_DA113_DC114miBBB13750.29 BB13
1145gtc_I_DC114_DA115BBBBB00500.52 BB00
1155gtc_I_DA115_DC116BBwBB02350.41 BB02
1165gtc_I_DC116_DT117miBBB15810.30 BB15
1175gtc_I_DT117_DT118BBwBB02670.25 BB02
1185gtc_I_DT118_DT119miBBB15810.22 BB15
1195gtc_I_DT119_DT120BBBBB00600.40 BB00
1205gtc_I_DT120_DG121B12BB04760.33 BB04
1215gtc_I_DG121_DG122miBBB15390.35 BB15
1225gtc_I_DG122_DT123miBBB15640.26 BB15
1235gtc_I_DT123_DA124BBBBB00610.28 BB00
1245gtc_I_DA124_DG125BBwBB11870.20 BB11
1255gtc_I_DG125_DA126BBBBB00400.28 BB00
1265gtc_I_DA126_DA127BBBBB00820.16 BB00
1275gtc_I_DA127_DT128BBwBB03590.58 BB03
1285gtc_I_DT128_DC129BBwBB02130.43 BB02
1295gtc_I_DC129_DT130B12BB04120.28 BB04
1305gtc_I_DT130_DG131NANNANT00.54 BB08
1315gtc_I_DG131_DC132BBBBB00510.33 BB00
1325gtc_I_DC132_DA133B12BB04220.55 BB04
1335gtc_I_DA133_DG134BBwBB02580.26 BB02
1345gtc_I_DG134_DG135BBwBB02230.32 BB02
1355gtc_I_DG135_DT136miBBB13670.22 BB13
1365gtc_I_DT136_DG137miBBB15580.49 BB15
1375gtc_I_DG137_DG138BBBBB00710.32 BB00
1385gtc_I_DG138_DA139BBwBB03570.35 BB03
1395gtc_I_DA139_DT140BBwBB02330.30 BB02
1405gtc_I_DT140_DA141B-ABA05110.39 BA05
1415gtc_I_DA141_DT142miBBB15690.24 BB15
1425gtc_I_DT142_DT143miBBB15810.15 BB15
1435gtc_I_DT143_DG144BBBBB00720.29 BB00
1445gtc_I_DG144_DA145BBBBB00880.16 BB00
1455gtc_I_DA145_DT146BBwBB02160.51 BB02
1465gtc_J_DA147_DT148BBwBB03810.32 BB03
1475gtc_J_DT148_DC149BBwBB02510.43 BB02
1485gtc_J_DC149_DA150NANNANT00.47 BB05
1495gtc_J_DA150_DA151BBBBB00110.28 BB00
1505gtc_J_DA151_DT152miBBB13370.33 BB13
1515gtc_J_DT152_DA153NANNANT00.67 BA10
1525gtc_J_DA153_DT154miBBB15760.23 BB15
1535gtc_J_DT154_DC155NANNANT00.36 BB02
1545gtc_J_DC155_DC156BBwBB02130.45 BB02
1555gtc_J_DC156_DA157BBwBB02280.41 BB02
1565gtc_J_DA157_DC158miBBB15730.28 BB15
1575gtc_J_DC158_DC159BBwBB02700.21 BB02
1585gtc_J_DC159_DT160BBBBB00370.29 BB00
1595gtc_J_DT160_DG161B12BB04850.20 BB04
1605gtc_J_DG161_DC162NANNANT00.35 BB15
1615gtc_J_DC162_DA163NANNANT00.41 BB07
1625gtc_J_DA163_DG164BBBBB00230.50 BB00
1635gtc_J_DG164_DA165NANNANT00.57 BB02
1645gtc_J_DA165_DT166BBwBB02420.33 BB02
1655gtc_J_DT166_DT167miBBB15650.27 BB15
1665gtc_J_DT167_DC168BBBBB00700.24 BB00
1675gtc_J_DC168_DT169BBwBB02490.27 BB02
1685gtc_J_DT169_DA170miBBB15640.28 BB15
1695gtc_J_DA170_DC171NANNANT00.41 BB02
1705gtc_J_DC171_DC172BBwBB03640.31 BB03
1715gtc_J_DC172_DA173BB2BB08250.36 BB08
1725gtc_J_DA173_DA174BBBBB00440.30 BB00
1735gtc_J_DA174_DA175BB2BB08650.42 BB08
1745gtc_J_DA175_DA176BBBBB00550.28 BB00
1755gtc_J_DA176_DG177BBBBB00870.18 BB00
1765gtc_J_DG177_DT178BBwBB02560.24 BB02
1775gtc_J_DT178_DG179BBBBB00600.22 BB00
1785gtc_J_DG179_DT180BBwBB02410.17 BB02
1795gtc_J_DT180_DA181BBBBB00600.23 BB00
1805gtc_J_DA181_DT182NANNANT00.53 BB11
1815gtc_J_DT182_DT183NANNANT00.51 BB02
1825gtc_J_DT183_DT184NANNANT00.36 BB15
1835gtc_J_DT184_DG185B12BB04440.29 BB04
1845gtc_J_DG185_DG186B12BB04120.55 BB04
1855gtc_J_DG186_DA187NANNANT00.58 BB10
1865gtc_J_DA187_DA188BBBBB00670.22 BB00
1875gtc_J_DA188_DA189BBwBB02110.31 BB02
1885gtc_J_DA189_DC190miBBB13420.27 BB13
1895gtc_J_DC190_DT191BBBBB00460.55 BB00
1905gtc_J_DT191_DG192BB2BB07490.20 BB07
1915gtc_J_DG192_DC193BBwBB02740.30 BB02
1925gtc_J_DC193_DT194BB2BB08650.44 BB08
1935gtc_J_DT194_DC195BBwBB02250.45 BB02
1945gtc_J_DC195_DC196BBBBB00420.32 BB00
1955gtc_J_DC196_DA197BBBBB00320.26 BB00
1965gtc_J_DA197_DT198miBBB15720.15 BB15
1975gtc_J_DT198_DC199NANNANT00.36 BB02
1985gtc_J_DC199_DA200NANNANT00.37 BB10
1995gtc_J_DA200_DA201miBBB15670.23 BB15
2005gtc_J_DA201_DA202B12BB0490.19 BB04
2015gtc_J_DA202_DA203BBBBB00740.13 BB00
2025gtc_J_DA203_DG204miBBB10490.45 BB10
2035gtc_J_DG204_DG205BB2BB07890.17 BB07
2045gtc_J_DG205_DC206BBwBB02630.24 BB02
2055gtc_J_DC206_DA207B12BB04130.19 BB04
2065gtc_J_DA207_DT208BBwBB02750.27 BB02
2075gtc_J_DT208_DG209miBBB15670.33 BB15
2085gtc_J_DG209_DT210miBBB15730.17 BB15
2095gtc_J_DT210_DT211BBwBB02390.28 BB02
2105gtc_J_DT211_DC212BBBBB00220.24 BB00
2115gtc_J_DC212_DA213BB2BB07550.27 BB07
2125gtc_J_DA213_DG214BB2BB07750.30 BB07
2135gtc_J_DG214_DC215BBBBB00460.32 BB00
2145gtc_J_DC215_DT216BB2BB07390.22 BB07
2155gtc_J_DT216_DG217BBBBB00420.32 BB00
2165gtc_J_DG217_DA218BBBBB00690.21 BB00
2175gtc_J_DA218_DA219miBBB15610.30 BB15
2185gtc_J_DA219_DT220BBwBB02610.20 BB02
2195gtc_J_DT220_DT221miBBB15750.22 BB15
2205gtc_J_DT221_DC222BBBBB00460.19 BB00
2215gtc_J_DC222_DA223BB2BB07600.22 BB07
2225gtc_J_DA223_DG224NANNANT00.37 BB04
2235gtc_J_DG224_DC225B12BB04440.33 BB04
2245gtc_J_DC225_DT226BB2BB07870.17 BB07
2255gtc_J_DT226_DG227BBBBB00430.30 BB00
2265gtc_J_DG227_DA228B12BB04700.26 BB04
2275gtc_J_DA228_DA229miBBB15810.19 BB15
2285gtc_J_DA229_DC230BBwBB02270.24 BB02
2295gtc_J_DC230_DA231B12BB04540.20 BB04
2305gtc_J_DA231_DT232BBwBB02590.20 BB02
2315gtc_J_DT232_DG233BBBBB00600.21 BB00
2325gtc_J_DG233_DC234B12BB04680.14 BB04
2335gtc_J_DC234_DC235BBBBB00660.23 BB00
2345gtc_J_DC235_DT236BB2BB07720.18 BB07
2355gtc_J_DT236_DT237BBBBB00360.24 BB00
2365gtc_J_DT237_DT238BBwBB02420.30 BB02
2375gtc_J_DT238_DT239NANNANT00.42 BB15
2385gtc_J_DT239_DG240NANNANT00.73 BB07
2395gtc_J_DG240_DA241NANNANT00.36 BB13
2405gtc_J_DA241_DT242NANNANT00.64 BB02
2415gtc_J_DT242_DG243miBBB15360.32 BB15
2425gtc_J_DG243_DG244BBBBB00600.18 BB00
2435gtc_J_DG244_DA245B12BB04390.30 BB04
2445gtc_J_DA245_DG246BB2BB07600.24 BB07
2455gtc_J_DG246_DC247NANNANT00.53 BB05
2465gtc_J_DC247_DA248NANNANT00.74 BB11
2475gtc_J_DA248_DG249miBBB15420.26 BB15
2485gtc_J_DG249_DT250BBwBB02420.30 BB02
2495gtc_J_DT250_DT251BBwBB02500.25 BB02
2505gtc_J_DT251_DT252NANNANT00.48 BB02
2515gtc_J_DT252_DC253miBBB13340.38 BB13
2525gtc_J_DC253_DC254NANNANT00.50 BB03
2535gtc_J_DC254_DA255B12BB04660.32 BB04
2545gtc_J_DA255_DA256BBBBB00690.34 BB00
2555gtc_J_DA256_DA257BBBBB00740.19 BB00
2565gtc_J_DA257_DT258miBBB15390.28 BB15
2575gtc_J_DT258_DA259BBBBB00410.27 BB00
2585gtc_J_DA259_DC260NANNANT00.40 BA10
2595gtc_J_DC260_DA261BBBBB00490.55 BB00
2605gtc_J_DA261_DC262BBwBB02420.38 BB02
2615gtc_J_DC262_DT263miBBB15780.35 BB15
2625gtc_J_DT263_DT264miBBB13280.33 BB13
2635gtc_J_DT264_DT265miBBB15750.30 BB15
2645gtc_J_DT265_DT266miBBB13560.23 BB13
2655gtc_J_DT266_DG267B12BB04270.57 BB04
2665gtc_J_DG267_DG268miBBB15450.26 BB15
2675gtc_J_DG268_DT269miBBB15600.30 BB15
2685gtc_J_DT269_DA270BBBBB00760.21 BB00
2695gtc_J_DA270_DG271miBBB12380.48 BB12
2705gtc_J_DG271_DA272BBwBB03560.35 BB03
2715gtc_J_DA272_DA273BBBBB00670.26 BB00
2725gtc_J_DA273_DT274BBwBB03790.32 BB03
2735gtc_J_DT274_DC275BBwBB02180.35 BB02
2745gtc_J_DC275_DT276miBBB15210.38 BB15
2755gtc_J_DT276_DG277NANNANT00.49 BB08
2765gtc_J_DG277_DC278BBBBB00330.46 BB00
2775gtc_J_DC278_DA279BB2BB07260.28 BB07
2785gtc_J_DA279_DG280BBwBB02190.37 BB02
2795gtc_J_DG280_DG281NANNANT00.28 BB15
2805gtc_J_DG281_DT282BBwBB02360.26 BB02
2815gtc_J_DT282_DG283miBBB15720.37 BB15
2825gtc_J_DG283_DG284BBBBB00650.43 BB00
2835gtc_J_DG284_DA285BBBBB00830.24 BB00
2845gtc_J_DA285_DT286BBwBB02440.25 BB02
2855gtc_J_DT286_DA287NANNANT00.53 BA08
2865gtc_J_DA287_DT288miBBB15640.23 BB15
2875gtc_J_DT288_DT289miBBB15820.18 BB15
2885gtc_J_DT289_DG290BBBBB00760.17 BB00
2895gtc_J_DG290_DA291BBBBB00750.38 BB00
2905gtc_J_DA291_DT292BBwBB02450.32 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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