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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of nucleosome complex with human testis-specific histone variants, Th2a

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015gt0_I_DA1_DT2BBwBB03760.28 BB03
0025gt0_I_DT2_DC3NANNANT00.56 BB02
0035gt0_I_DC3_DA4NANNANT00.54 BB11
0045gt0_I_DA4_DA5miBBB15820.26 BB15
0055gt0_I_DA5_DT6BBwBB02390.29 BB02
0065gt0_I_DT6_DA7miBBB15710.28 BB15
0075gt0_I_DA7_DT8miBBB15580.32 BB15
0085gt0_I_DT8_DC9BBwBB02240.23 BB02
0095gt0_I_DC9_DC10NANNANT00.50 BB02
0105gt0_I_DC10_DA11BBwBB02580.37 BB02
0115gt0_I_DA11_DC12miBBB15770.26 BB15
0125gt0_I_DC12_DC13BBwBB02650.30 BB02
0135gt0_I_DC13_DT14BBBBB00510.23 BB00
0145gt0_I_DT14_DG15B12BB04770.26 BB04
0155gt0_I_DG15_DC16BBBBB00100.27 BB00
0165gt0_I_DC16_DA17B12BB04270.50 BB04
0175gt0_I_DA17_DG18BBBBB00710.24 BB00
0185gt0_I_DG18_DA19NANNANT00.54 BB00
0195gt0_I_DA19_DT20BBwBB02490.34 BB02
0205gt0_I_DT20_DT21miBBB15590.27 BB15
0215gt0_I_DT21_DC22BBBBB00730.22 BB00
0225gt0_I_DC22_DT23BBwBB02750.26 BB02
0235gt0_I_DT23_DA24BBBBB00310.32 BB00
0245gt0_I_DA24_DC25BBBBB00580.47 BB00
0255gt0_I_DC25_DC26BBBBB00360.28 BB00
0265gt0_I_DC26_DA27BB2BB07590.40 BB07
0275gt0_I_DA27_DA28BBBBB00700.27 BB00
0285gt0_I_DA28_DA29BB2BB08770.34 BB08
0295gt0_I_DA29_DA30BBBBB00140.39 BB00
0305gt0_I_DA30_DG31BBBBB00850.23 BB00
0315gt0_I_DG31_DT32BBwBB02740.23 BB02
0325gt0_I_DT32_DG33BBBBB00730.23 BB00
0335gt0_I_DG33_DT34miBBB13360.43 BB13
0345gt0_I_DT34_DA35BBBBB00690.32 BB00
0355gt0_I_DA35_DT36NANNANT00.45 BA10
0365gt0_I_DT36_DT37NANNANT00.36 BB02
0375gt0_I_DT37_DT38miBBB15190.41 BB15
0385gt0_I_DT38_DG39BB2BB07500.37 BB07
0395gt0_I_DG39_DG40NANNANT00.67 BB02
0405gt0_I_DG40_DA41NANNANT00.59 BB04
0415gt0_I_DA41_DA42BBwBB03230.36 BB03
0425gt0_I_DA42_DA43miBBB15600.28 BB15
0435gt0_I_DA43_DC44BBwBB02460.27 BB02
0445gt0_I_DC44_DT45miBBB13630.44 BB13
0455gt0_I_DT45_DG46NANNANT00.68 BB11
0465gt0_I_DG46_DC47BBwBB02500.30 BB02
0475gt0_I_DC47_DT48NANNANT00.61 BB08
0485gt0_I_DT48_DC49BBwBB02250.39 BB02
0495gt0_I_DC49_DC50BBBBB00440.30 BB00
0505gt0_I_DC50_DA51BBBBB00230.14 BB00
0515gt0_I_DA51_DT52BBwBB02430.29 BB02
0525gt0_I_DT52_DC53BBwBB02210.41 BB02
0535gt0_I_DC53_DA54miBBB10160.33 BB10
0545gt0_I_DA54_DA55NANNANT00.71 BB13
0555gt0_I_DA55_DA56BBwBB03290.55 BB03
0565gt0_I_DA56_DA57BBBBB00600.30 BB00
0575gt0_I_DA57_DG58B12BB04400.45 BB04
0585gt0_I_DG58_DG59BB2BB07680.21 BB07
0595gt0_I_DG59_DC60miBBB15630.33 BB15
0605gt0_I_DC60_DA61B12BB04260.22 BB04
0615gt0_I_DA61_DT62BBwBB02620.19 BB02
0625gt0_I_DT62_DG63miBBB15660.28 BB15
0635gt0_I_DG63_DT64miBBB15630.26 BB15
0645gt0_I_DT64_DT65BBwBB02570.24 BB02
0655gt0_I_DT65_DC66BBBBB00290.29 BB00
0665gt0_I_DC66_DA67BB2BB07520.24 BB07
0675gt0_I_DA67_DG68B12BB04280.50 BB04
0685gt0_I_DG68_DC69B12BB04500.25 BB04
0695gt0_I_DC69_DT70BB2BB07490.30 BB07
0705gt0_I_DT70_DG71BBBBB00200.23 BB00
0715gt0_I_DG71_DA72BBBBB00590.32 BB00
0725gt0_I_DA72_DA73miBBB15650.26 BB15
0735gt0_I_DA73_DT74BBwBB02570.27 BB02
0745gt0_I_DT74_DT75miBBB15890.17 BB15
0755gt0_I_DT75_DC76BBBBB00680.20 BB00
0765gt0_I_DC76_DA77BB2BB07840.21 BB07
0775gt0_I_DA77_DG78B12BB04230.43 BB04
0785gt0_I_DG78_DC79BB2BB07770.18 BB07
0795gt0_I_DC79_DT80B12BB04600.35 BB04
0805gt0_I_DT80_DG81B12BB04710.26 BB04
0815gt0_I_DG81_DA82BBBBB00730.23 BB00
0825gt0_I_DA82_DA83miBBB15830.17 BB15
0835gt0_I_DA83_DC84BBwBB02530.27 BB02
0845gt0_I_DC84_DA85B12BB04260.23 BB04
0855gt0_I_DA85_DT86BBwBB02500.22 BB02
0865gt0_I_DT86_DG87BBBBB00600.27 BB00
0875gt0_I_DG87_DC88BB2BB07870.28 BB07
0885gt0_I_DC88_DC89BBBBB00430.30 BB00
0895gt0_I_DC89_DT90BB2BB07860.25 BB07
0905gt0_I_DT90_DT91miBBB15710.23 BB15
0915gt0_I_DT91_DT92BBwBB02750.20 BB02
0925gt0_I_DT92_DT93NANNANT00.47 BB02
0935gt0_I_DT93_DG94NANNANT00.22 BB15
0945gt0_I_DG94_DA95BBBBB00660.30 BB00
0955gt0_I_DA95_DT96NANNANT00.35 BB02
0965gt0_I_DT96_DG97BBBBB00410.37 BB00
0975gt0_I_DG97_DG98BBBBB00680.23 BB00
0985gt0_I_DG98_DA99BB2BB07460.18 BB07
0995gt0_I_DA99_DG100B12BB04380.49 BB04
1005gt0_I_DG100_DC101BB2BB08460.37 BB08
1015gt0_I_DC101_DA102BBBBB00140.55 BB00
1025gt0_I_DA102_DG103miBBB15360.34 BB15
1035gt0_I_DG103_DT104BBwBB02390.29 BB02
1045gt0_I_DT104_DT105BBwBB02600.19 BB02
1055gt0_I_DT105_DT106miBBB15420.32 BB15
1065gt0_I_DT106_DC107BBBBB00440.21 BB00
1075gt0_I_DC107_DC108BB2BB08370.27 BB08
1085gt0_I_DC108_DA109BB2BB07370.45 BB07
1095gt0_I_DA109_DA110BBBBB00690.28 BB00
1105gt0_I_DA110_DA111BBBBB00710.26 BB00
1115gt0_I_DA111_DT112miBBB15210.31 BB15
1125gt0_I_DT112_DA113BBBBB00160.26 BB00
1135gt0_I_DA113_DC114NANNANT00.33 BB02
1145gt0_I_DC114_DA115BBBBB00600.30 BB00
1155gt0_I_DA115_DC116BBwBB02450.33 BB02
1165gt0_I_DC116_DT117miBBB15670.27 BB15
1175gt0_I_DT117_DT118BBwBB02370.24 BB02
1185gt0_I_DT118_DT119BBwBB02570.26 BB02
1195gt0_I_DT119_DT120miBBB15310.34 BB15
1205gt0_I_DT120_DG121B12BB04680.31 BB04
1215gt0_I_DG121_DG122miBBB15430.32 BB15
1225gt0_I_DG122_DT123miBBB15660.20 BB15
1235gt0_I_DT123_DA124BBBBB00750.28 BB00
1245gt0_I_DA124_DG125BBwBB11870.26 BB11
1255gt0_I_DG125_DA126BBBBB00530.37 BB00
1265gt0_I_DA126_DA127BBBBB00820.15 BB00
1275gt0_I_DA127_DT128BBwBB03580.45 BB03
1285gt0_I_DT128_DC129BBwBB02120.45 BB02
1295gt0_I_DC129_DT130miBBB15180.33 BB15
1305gt0_I_DT130_DG131BB2BB08700.42 BB08
1315gt0_I_DG131_DC132BBBBB00320.41 BB00
1325gt0_I_DC132_DA133BB2BB07420.25 BB07
1335gt0_I_DA133_DG134BBwBB02340.31 BB02
1345gt0_I_DG134_DG135NANNANT00.39 BB02
1355gt0_I_DG135_DT136miBBB12480.49 BB12
1365gt0_I_DT136_DG137miBBB15400.68 BB15
1375gt0_I_DG137_DG138BBBBB00520.35 BB00
1385gt0_I_DG138_DA139BBBBB00160.32 BB00
1395gt0_I_DA139_DT140BBwBB02270.29 BB02
1405gt0_I_DT140_DA141BBBBB00230.29 BB00
1415gt0_I_DA141_DT142miBBB15490.32 BB15
1425gt0_I_DT142_DT143BBBBB00190.23 BB00
1435gt0_I_DT143_DG144BBBBB00790.22 BB00
1445gt0_I_DG144_DA145BBBBB00830.26 BB00
1455gt0_I_DA145_DT146BBwBB02390.32 BB02
1465gt0_J_DA147_DT148BBwBB03810.17 BB03
1475gt0_J_DT148_DC149NANNANT00.54 BB02
1485gt0_J_DC149_DA150BBwBB02300.31 BB02
1495gt0_J_DA150_DA151miBBB15480.41 BB15
1505gt0_J_DA151_DT152miBBB13610.28 BB13
1515gt0_J_DT152_DA153miBBB15710.42 BB15
1525gt0_J_DA153_DT154miBBB15660.28 BB15
1535gt0_J_DT154_DC155BBwBB02180.36 BB02
1545gt0_J_DC155_DC156NANNANT00.51 BB02
1555gt0_J_DC156_DA157BBwBB02500.43 BB02
1565gt0_J_DA157_DC158miBBB15620.33 BB15
1575gt0_J_DC158_DC159BBwBB02500.26 BB02
1585gt0_J_DC159_DT160BBBBB00340.35 BB00
1595gt0_J_DT160_DG161B12BB04730.32 BB04
1605gt0_J_DG161_DC162miBBB15400.32 BB15
1615gt0_J_DC162_DA163B12BB04410.48 BB04
1625gt0_J_DA163_DG164BBBBB00700.25 BB00
1635gt0_J_DG164_DA165NANNANT00.31 BB05
1645gt0_J_DA165_DT166BBwBB02580.32 BB02
1655gt0_J_DT166_DT167BBBBB00110.36 BB00
1665gt0_J_DT167_DC168BBBBB00660.30 BB00
1675gt0_J_DC168_DT169BBwBB02650.29 BB02
1685gt0_J_DT169_DA170BBBBB00140.28 BB00
1695gt0_J_DA170_DC171BBwBB02640.34 BB02
1705gt0_J_DC171_DC172BBBBB00330.26 BB00
1715gt0_J_DC172_DA173NANNANT00.53 BB08
1725gt0_J_DA173_DA174BBBBB00670.27 BB00
1735gt0_J_DA174_DA175BB2BB08750.40 BB08
1745gt0_J_DA175_DA176BBBBB00560.24 BB00
1755gt0_J_DA176_DG177BBBBB00860.18 BB00
1765gt0_J_DG177_DT178BBwBB02610.28 BB02
1775gt0_J_DT178_DG179BBBBB00800.20 BB00
1785gt0_J_DG179_DT180BBwBB02550.27 BB02
1795gt0_J_DT180_DA181BBBBB00780.20 BB00
1805gt0_J_DA181_DT182NANNANT00.44 BA10
1815gt0_J_DT182_DT183NANNANT00.34 BB11
1825gt0_J_DT183_DT184NANNANT00.51 BB02
1835gt0_J_DT184_DG185BB2BB07580.38 BB07
1845gt0_J_DG185_DG186miBBB15420.35 BB15
1855gt0_J_DG186_DA187NANNANT00.63 BB10
1865gt0_J_DA187_DA188BBBBB00710.21 BB00
1875gt0_J_DA188_DA189miBBB15650.22 BB15
1885gt0_J_DA189_DC190miBBB13770.25 BB13
1895gt0_J_DC190_DT191BBBBB00390.61 BB00
1905gt0_J_DT191_DG192BB2BB07660.20 BB07
1915gt0_J_DG192_DC193BBwBB02310.34 BB02
1925gt0_J_DC193_DT194BB2BB08620.29 BB08
1935gt0_J_DT194_DC195NANNANT00.61 BB02
1945gt0_J_DC195_DC196B12BB04560.28 BB04
1955gt0_J_DC196_DA197BBBBB00430.17 BB00
1965gt0_J_DA197_DT198BBwBB02390.33 BB02
1975gt0_J_DT198_DC199BBwBB02350.35 BB02
1985gt0_J_DC199_DA200miBBB10190.30 BB10
1995gt0_J_DA200_DA201miBBB15590.19 BB15
2005gt0_J_DA201_DA202miBBB10230.44 BB10
2015gt0_J_DA202_DA203BBBBB00770.17 BB00
2025gt0_J_DA203_DG204B12BB04510.32 BB04
2035gt0_J_DG204_DG205BB2BB07750.20 BB07
2045gt0_J_DG205_DC206miBBB15450.37 BB15
2055gt0_J_DC206_DA207B12BB04550.27 BB04
2065gt0_J_DA207_DT208BBwBB02600.23 BB02
2075gt0_J_DT208_DG209miBBB15560.37 BB15
2085gt0_J_DG209_DT210miBBB15630.26 BB15
2095gt0_J_DT210_DT211BBwBB02450.33 BB02
2105gt0_J_DT211_DC212BBBBB00210.29 BB00
2115gt0_J_DC212_DA213B12BB04520.22 BB04
2125gt0_J_DA213_DG214BB2BB07770.20 BB07
2135gt0_J_DG214_DC215B12BB04230.50 BB04
2145gt0_J_DC215_DT216BB2BB07690.28 BB07
2155gt0_J_DT216_DG217BBBBB00340.32 BB00
2165gt0_J_DG217_DA218BBBBB00600.23 BB00
2175gt0_J_DA218_DA219miBBB15700.18 BB15
2185gt0_J_DA219_DT220BBwBB02590.23 BB02
2195gt0_J_DT220_DT221miBBB15830.21 BB15
2205gt0_J_DT221_DC222BBBBB00550.23 BB00
2215gt0_J_DC222_DA223BB2BB07830.18 BB07
2225gt0_J_DA223_DG224B12BB04310.32 BB04
2235gt0_J_DG224_DC225BB2BB07260.36 BB07
2245gt0_J_DC225_DT226BB2BB07740.27 BB07
2255gt0_J_DT226_DG227B12BB04660.39 BB04
2265gt0_J_DG227_DA228B12BB04680.27 BB04
2275gt0_J_DA228_DA229miBBB15850.20 BB15
2285gt0_J_DA229_DC230BBwBB02590.22 BB02
2295gt0_J_DC230_DA231B12BB04240.22 BB04
2305gt0_J_DA231_DT232BBwBB02430.24 BB02
2315gt0_J_DT232_DG233BBBBB00540.29 BB00
2325gt0_J_DG233_DC234BB2BB07840.18 BB07
2335gt0_J_DC234_DC235B12BB04610.41 BB04
2345gt0_J_DC235_DT236BB2BB07740.17 BB07
2355gt0_J_DT236_DT237miBBB15460.38 BB15
2365gt0_J_DT237_DT238BBwBB02680.23 BB02
2375gt0_J_DT238_DT239NANNANT00.48 BB02
2385gt0_J_DT239_DG240NANNANT00.37 BB10
2395gt0_J_DG240_DA241NANNANT00.57 BB03
2405gt0_J_DA241_DT242NANNANT00.52 BB02
2415gt0_J_DT242_DG243BBwBB02210.33 BB02
2425gt0_J_DG243_DG244BBBBB00640.28 BB00
2435gt0_J_DG244_DA245BBBBB00650.21 BB00
2445gt0_J_DA245_DG246B12BB04570.32 BB04
2455gt0_J_DG246_DC247NANNANT00.34 BB02
2465gt0_J_DC247_DA248NANNANT00.78 BB08
2475gt0_J_DA248_DG249miBBB15660.28 BB15
2485gt0_J_DG249_DT250BBwBB02520.23 BB02
2495gt0_J_DT250_DT251BBwBB02680.17 BB02
2505gt0_J_DT251_DT252NANNANT00.35 BB15
2515gt0_J_DT252_DC253miBBB13480.25 BB13
2525gt0_J_DC253_DC254NANNANT00.62 BB11
2535gt0_J_DC254_DA255BB2BB07630.38 BB07
2545gt0_J_DA255_DA256BBBBB00720.27 BB00
2555gt0_J_DA256_DA257BBBBB00730.22 BB00
2565gt0_J_DA257_DT258BBwBB02240.35 BB02
2575gt0_J_DT258_DA259BBBBB00500.32 BB00
2585gt0_J_DA259_DC260BBwBB02580.27 BB02
2595gt0_J_DC260_DA261BBBBB00660.30 BB00
2605gt0_J_DA261_DC262BBwBB02620.23 BB02
2615gt0_J_DC262_DT263miBBB15730.31 BB15
2625gt0_J_DT263_DT264BBBBB00120.31 BB00
2635gt0_J_DT264_DT265BBwBB02450.30 BB02
2645gt0_J_DT265_DT266miBBB13600.29 BB13
2655gt0_J_DT266_DG267B12BB04130.62 BB04
2665gt0_J_DG267_DG268miBBB15600.25 BB15
2675gt0_J_DG268_DT269BBBBB00190.34 BB00
2685gt0_J_DT269_DA270BBBBB00710.33 BB00
2695gt0_J_DA270_DG271miBBB12410.48 BB12
2705gt0_J_DG271_DA272BBwBB03600.24 BB03
2715gt0_J_DA272_DA273BBBBB00700.27 BB00
2725gt0_J_DA273_DT274NANNANT00.44 BB03
2735gt0_J_DT274_DC275BBwBB02130.42 BB02
2745gt0_J_DC275_DT276miBBB15330.31 BB15
2755gt0_J_DT276_DG277NANNANT00.45 BB08
2765gt0_J_DG277_DC278BBBBB00240.48 BB00
2775gt0_J_DC278_DA279BB2BB07580.24 BB07
2785gt0_J_DA279_DG280BBwBB02440.37 BB02
2795gt0_J_DG280_DG281NANNANT00.42 BB02
2805gt0_J_DG281_DT282BBwBB02690.25 BB02
2815gt0_J_DT282_DG283miBBB15610.45 BB15
2825gt0_J_DG283_DG284BBBBB00590.41 BB00
2835gt0_J_DG284_DA285BBBBB00200.44 BB00
2845gt0_J_DA285_DT286BBwBB02310.29 BB02
2855gt0_J_DT286_DA287BBBBB00210.28 BB00
2865gt0_J_DA287_DT288miBBB15810.18 BB15
2875gt0_J_DT288_DT289BBBBB00330.19 BB00
2885gt0_J_DT289_DG290BBBBB00830.15 BB00
2895gt0_J_DG290_DA291BBBBB00620.45 BB00
2905gt0_J_DA291_DT292BBwBB02790.20 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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