DNATCO v4.1: results

Crystal structure of SpCas9 variant VRER bound to sgRNA and TGCG PAM target DNA

Results of the assignment of 117 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	5fw3_A_A1_U2	AAw	AA06	41	0.45	AA06
002	5fw3_A_U2_A3	AAA	AA08	62	0.25	AA08
003	5fw3_A_A3_A4	AAA	AA00	61	0.19	AA00
004	5fw3_A_A4_C5	AAA	AA00	82	0.17	AA00
005	5fw3_A_C5_U6	AAA	AA00	64	0.25	AA00
006	5fw3_A_U6_C7	AAA	AA08	77	0.18	AA08
007	5fw3_A_C7_A8	AAA	AA00	31	0.20	AA00
008	5fw3_A_A8_A9	NAN	NANT	0	0.51	AB02
009	5fw3_A_A9_U10	AAA	AA00	86	0.20	AA00
010	5fw3_A_U10_U11	AAA	AA00	88	0.16	AA00
011	5fw3_A_U11_U12	AAA	AA00	95	0.14	AA00
012	5fw3_A_U12_G13	AAA	AA00	87	0.15	AA00
013	5fw3_A_G13_U14	AAA	AA00	82	0.25	AA00
014	5fw3_A_U14_A15	AAA	AA00	79	0.16	AA00
015	5fw3_A_A15_A16	AAA	AA00	96	0.17	AA00
016	5fw3_A_A16_A17	AAw	AA01	59	0.21	AA01
017	5fw3_A_A17_A18	AAA	AA08	66	0.30	AA08
018	5fw3_A_A18_A19	AAA	AA00	76	0.14	AA00
019	5fw3_A_A19_A20	AAw	AA10	84	0.14	AA10
020	5fw3_A_A20_G21	AAA	AA08	53	0.35	AA08
021	5fw3_A_G21_U22	AAA	AA00	78	0.22	AA00
022	5fw3_A_U22_U23	AAA	AA08	88	0.18	AA08
023	5fw3_A_U23_U24	NAN	NANT	0	0.49	AA06
024	5fw3_A_U24_U25	AAA	AA08	89	0.18	AA08
025	5fw3_A_U25_A26	AAA	AA00	82	0.14	AA00
026	5fw3_A_A26_G27	AAw	AA01	45	0.42	AA01
027	5fw3_A_G27_A28	NAN	NANT	0	1.40	OP13
028	5fw3_A_A28_G29	NAN	NANT	0	1.43	OP13
029	5fw3_A_G29_C30	AAA	AA00	85	0.14	AA00
030	5fw3_A_C30_U31	AAw	AA10	23	0.44	AA10
031	5fw3_A_U31_A32	NAN	NANT	0	0.64	AA10
032	5fw3_A_A32_G33	AAA	AA08	25	0.60	AA08
033	5fw3_A_G33_A34	OPN	OP04	25	0.32	OP04
034	5fw3_A_A34_A35	NAN	NANT	0	0.44	AA04
035	5fw3_A_A35_A36	NAN	NANT	0	0.67	AA08
036	5fw3_A_A36_U37	NAN	NANT	0	0.97	AA04
037	5fw3_A_U37_A38	NAN	NANT	0	0.64	AA11
038	5fw3_A_A38_G39	AAw	AA05	23	0.60	AA05
039	5fw3_A_G39_C40	NAN	NANT	0	0.37	AA08
040	5fw3_A_C40_A41	AAA	AA08	89	0.22	AA08
041	5fw3_A_A41_A42	NAN	NANT	0	0.79	AA11
042	5fw3_A_A42_G43	NAN	NANT	0	0.71	AB02
043	5fw3_A_G43_U44	NAN	NANT	0	0.69	OP20
044	5fw3_A_U44_U45	OPN	OP11	17	0.57	OP11
045	5fw3_A_U45_A46	AAA	AA00	86	0.20	AA00
046	5fw3_A_A46_A47	AAA	AA00	88	0.13	AA00
047	5fw3_A_A47_A48	AAA	AA08	85	0.20	AA08
048	5fw3_A_A48_A49	AAA	AA00	94	0.15	AA00
049	5fw3_A_A49_U50	AAA	AA08	72	0.19	AA08
050	5fw3_A_U50_A51	NAN	NANT	0	1.63	OP02
051	5fw3_A_A51_A52	NAN	NANT	0	0.92	OPS1
052	5fw3_A_A52_G53	AAw	AA05	7	0.58	AA05
053	5fw3_A_G53_G54	AAA	AA00	62	0.24	AA00
054	5fw3_A_G54_C55	A-B	AB05	67	0.27	AB05
055	5fw3_A_C55_U56	NAN	NANT	0	1.51	BB00
056	5fw3_A_U56_A57	NAN	NANT	0	0.51	IC06
057	5fw3_A_A57_G58	NAN	NANT	0	0.57	ZZ02
058	5fw3_A_G58_U59	NAN	NANT	0	1.00	OP17
059	5fw3_A_U59_C60	NAN	NANT	0	0.56	OP06
060	5fw3_A_C60_C61	AAA	AA00	91	0.17	AA00
061	5fw3_A_C61_G62	AAA	AA00	75	0.19	AA00
062	5fw3_A_G62_U63	NAN	NANT	0	0.87	IC02
063	5fw3_A_U63_U64	OPN	OP11	68	0.35	OP11
064	5fw3_A_U64_A65	AAA	AA00	51	0.42	AA00
065	5fw3_A_A65_U66	AAA	AA00	28	0.42	AA00
066	5fw3_A_U66_C67	AAA	AA00	22	0.46	AA00
067	5fw3_A_C67_A68	NAN	NANT	0	1.43	OP17
068	5fw3_A_A68_A69	AAA	AA04	66	0.40	AA04
069	5fw3_A_A69_C70	AAA	AA00	71	0.12	AA00
070	5fw3_A_C70_U71	AAA	AA00	74	0.16	AA00
071	5fw3_A_U71_U72	AAA	AA00	12	0.44	AA00
072	5fw3_A_U72_G73	AAw	AA01	12	0.33	AA01
073	5fw3_A_G73_A74	NAN	NANT	0	2.52	OP11
074	5fw3_A_A74_A75	AAA	AA03	16	0.51	AA03
075	5fw3_A_A75_A76	AAA	AA00	32	0.30	AA00
076	5fw3_A_A76_A77	NAN	NANT	0	0.89	AA08
077	5fw3_A_A77_A78	AAA	AA04	73	0.23	AA04
078	5fw3_A_A78_G79	AAA	AA00	18	0.36	AA00
079	5fw3_A_G79_U80	AAA	AA00	55	0.28	AA00
080	5fw3_A_U80_G81	NAN	NANT	0	0.71	AB05
081	5fw3_C_DC1_DA2	A-B	AB05	14	0.33	AB05
082	5fw3_C_DA2_DA3	BBB	BB00	58	0.25	BB00
083	5fw3_C_DA3_DC4	BBB	BB01	60	0.24	BB01
084	5fw3_C_DC4_DC5	BBB	BB00	19	0.27	BB00
085	5fw3_C_DC5_DG6	BBB	BB00	91	0.17	BB00
086	5fw3_C_DG6_DC7	BBB	BB00	62	0.27	BB00
087	5fw3_C_DC7_DA8	B12	BB04	79	0.24	BB04
088	5fw3_C_DA8_DT9	NAN	NANT	0	0.53	OP17
089	5fw3_C_DT9_DT10	AAA	AA00	42	0.45	AA00
090	5fw3_C_DT10_DT11	AAA	AA04	76	0.32	AA04
091	5fw3_C_DT11_DT12	AAA	AA00	84	0.29	AA00
092	5fw3_C_DT12_DT13	AAA	AA00	77	0.30	AA00
093	5fw3_C_DT13_DT14	AAA	AA00	89	0.23	AA00
094	5fw3_C_DT14_DA15	AAA	AA00	80	0.18	AA00
095	5fw3_C_DA15_DC16	AAA	AA00	88	0.28	AA00
096	5fw3_C_DC16_DA17	AAA	AA00	81	0.24	AA00
097	5fw3_C_DA17_DA18	AAA	AA00	66	0.24	AA00
098	5fw3_C_DA18_DA19	NAN	NANT	0	0.36	AA01
099	5fw3_C_DA19_DT20	B-A	BA05	9	0.38	BA05
100	5fw3_C_DT20_DT21	BBB	BB01	35	0.22	BB01
101	5fw3_C_DT21_DG22	BBB	BB00	26	0.41	BB00
102	5fw3_C_DG22_DA23	B-A	BA08	76	0.25	BA08
103	5fw3_C_DA23_DG24	AAw	AA01	93	0.16	AA01
104	5fw3_C_DG24_DT25	AAA	AA00	9	0.40	AA00
105	5fw3_C_DT25_DT26	AAA	AA00	85	0.26	AA00
106	5fw3_C_DT26_DA27	AAw	AA10	78	0.23	AA10
107	5fw3_C_DA27_DT28	A-B	AB05	37	0.30	AB05
108	5fw3_D_DA2_DA3	NAN	NANT	0	0.57	BB13
109	5fw3_D_DA3_DA4	BBB	BB00	33	0.61	BB00
110	5fw3_D_DA4_DT5	NAN	NANT	0	0.41	BB07
111	5fw3_D_DT5_DG6	BB2	BB07	47	0.25	BB07
112	5fw3_D_DG6_DC7	BBw	BB02	56	0.18	BB02
113	5fw3_D_DC7_DG8	BBB	BB00	15	0.28	BB00
114	5fw3_D_DG8_DA9	BBB	BB01	67	0.21	BB01
115	5fw3_D_DA9_DT10	NAN	NANT	0	0.49	AB02
116	5fw3_D_DT10_DT11	BBB	BB00	48	0.37	BB00
117	5fw3_D_DT11_DG12	miB	BB10	51	0.31	BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 117 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Restraints

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Definitions

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