DNATCO v4.1: results

Structure of the standard kink turn HmKt-7 as stem loop bound with U1A and L7Ae proteins

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5fj4_D_G1_A2	AAA	AA00	59	0.17	AA00
02	5fj4_D_A2_G3	AAw	AA06	82	0.28	AA06
03	5fj4_D_G3_G4	AAA	AA08	30	0.52	AA08
04	5fj4_D_G4_G5	NAN	NANT	0	0.73	BB17
05	5fj4_D_G5_A6	OPN	OP22	16	0.69	OP22
06	5fj4_D_A6_G7	OPN	OP24	93	0.25	OP24
07	5fj4_D_G7_C8	AAA	AA08	79	0.19	AA08
08	5fj4_D_C8_G9	AAw	AA01	83	0.20	AA01
09	5fj4_D_G9_C10	AAA	AA08	89	0.17	AA08
10	5fj4_D_C10_C11	AAA	AA00	89	0.13	AA00
11	5fj4_D_C11_A12	AAA	AA00	68	0.27	AA00
12	5fj4_D_A12_U13	AAA	AA00	86	0.20	AA00
13	5fj4_D_U13_U14	ICL	IC02	88	0.13	IC02
14	5fj4_D_U14_G15	ZZZ	ZZ02	58	0.64	ZZ02
15	5fj4_D_G15_C16	NAN	NANT	0	0.78	IC02
16	5fj4_D_C16_A17	NAN	NANT	0	0.56	OP15
17	5fj4_D_A17_C18	AAA	AA08	90	0.14	AA08
18	5fj4_D_C18_U19	NAN	NANT	0	1.43	OP31
19	5fj4_D_U19_C20	NAN	NANT	0	0.74	OP12
20	5fj4_D_C20_C21	AAA	AA00	35	0.24	AA00
21	5fj4_D_C21_G22	NAN	NANT	0	1.48	OP17
22	5fj4_D_G22_G23	AAA	AA00	81	0.11	AA00
23	5fj4_D_G23_U24	AAA	AA08	94	0.17	AA08
24	5fj4_D_U24_G25	AAu	AA12	83	0.21	AA12
25	5fj4_D_G25_C26	AAA	AA00	83	0.19	AA00
26	5fj4_D_C26_G27	AAA	AA00	85	0.23	AA00
27	5fj4_D_G27_A28	NAN	NANT	0	0.95	BB1S
28	5fj4_D_A28_A29	NAN	NANT	0	0.64	OP21
29	5fj4_D_A29_G30	NAN	NANT	0	0.58	OP20
30	5fj4_D_G30_A31	OPN	OP10	92	0.14	OP10
31	5fj4_D_A31_A32	AAA	AA08	83	0.20	AA08
32	5fj4_D_A32_C33	AAA	AA08	70	0.42	AA08
33	5fj4_D_C33_U34	AAA	AA00	86	0.15	AA00
34	5fj4_D_U34_C35	AAA	AA00	81	0.18	AA00
35	5fj4_H_G1_A2	AAA	AA00	69	0.21	AA00
36	5fj4_H_A2_G3	AAw	AA01	50	0.25	AA01
37	5fj4_H_G3_G4	AAA	AA08	69	0.46	AA08
38	5fj4_H_G4_G5	A-B	AB05	46	0.33	AB05
39	5fj4_H_G5_A6	OPN	OP22	19	0.56	OP22
40	5fj4_H_A6_G7	OPN	OP24	82	0.35	OP24
41	5fj4_H_G7_C8	AAA	AA00	93	0.12	AA00
42	5fj4_H_C8_G9	AAw	AA10	63	0.18	AA10
43	5fj4_H_G9_C10	AAA	AA08	57	0.20	AA08
44	5fj4_H_C10_C11	AAA	AA00	82	0.18	AA00
45	5fj4_H_C11_A12	AAA	AA00	84	0.19	AA00
46	5fj4_H_A12_U13	AAA	AA00	82	0.25	AA00
47	5fj4_H_U13_U14	ICL	IC02	94	0.17	IC02
48	5fj4_H_U14_G15	ZZZ	ZZ02	35	0.72	ZZ02
49	5fj4_H_G15_C16	NAN	NANT	0	0.78	IC02
50	5fj4_H_C16_A17	OPN	OP15	28	0.58	OP15
51	5fj4_H_A17_C18	AAA	AA08	69	0.18	AA08
52	5fj4_H_C18_U19	NAN	NANT	0	2.00	OP06
53	5fj4_H_U19_C20	NAN	NANT	0	0.96	OP15
54	5fj4_H_C20_C21	AAA	AA08	38	0.28	AA08
55	5fj4_H_C21_G22	NAN	NANT	0	1.47	OP17
56	5fj4_H_G22_G23	AAA	AA08	88	0.14	AA08
57	5fj4_H_G23_U24	AAA	AA00	47	0.35	AA00
58	5fj4_H_U24_G25	AAu	AA12	80	0.15	AA12
59	5fj4_H_G25_C26	AAA	AA08	84	0.20	AA08
60	5fj4_H_C26_G27	AAA	AA00	83	0.20	AA00
61	5fj4_H_G27_A28	NAN	NANT	0	0.96	BB2S
62	5fj4_H_A28_A29	NAN	NANT	0	0.58	OP21
63	5fj4_H_A29_G30	NAN	NANT	0	0.55	OP20
64	5fj4_H_G30_A31	OPN	OP10	36	0.26	OP10
65	5fj4_H_A31_A32	AAA	AA00	72	0.25	AA00
66	5fj4_H_A32_C33	AAA	AA08	46	0.50	AA08
67	5fj4_H_C33_U34	AAA	AA00	79	0.16	AA00
68	5fj4_H_U34_C35	AAA	AA00	46	0.22	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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