Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of RecU(D88N) in complex with palindromic DNA duplex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5fdk_E_DA1_DC2 | NAN | NANT | 0 | 0.86 |
| 02 | 5fdk_E_DC2_DG3 | NAN | NANT | 0 | 0.64 |
| 03 | 5fdk_E_DG3_DC4 | BBB | BB00 | 22 | 0.52 |
| 04 | 5fdk_E_DC4_DA5 | B12 | BB04 | 35 | 0.39 |
| 05 | 5fdk_E_DA5_DA6 | BBw | BB02 | 73 | 0.18 |
| 06 | 5fdk_E_DA6_DT7 | B-A | BA05 | 60 | 0.34 |
| 07 | 5fdk_E_DT7_DT8 | NAN | NANT | 0 | 0.54 |
| 08 | 5fdk_E_DT8_DG9 | A-B | AB01 | 29 | 0.61 |
| 09 | 5fdk_E_DG9_DC10 | BB2 | BB07 | 90 | 0.24 |
| 10 | 5fdk_E_DC10_DG11 | BBB | BB00 | 74 | 0.22 |
| 11 | 5fdk_E_DG11_DT12 | BBB | BB00 | 60 | 0.36 |
| 12 | 5fdk_F_DA1_DC2 | NAN | NANT | 0 | 0.66 |
| 13 | 5fdk_F_DC2_DG3 | NAN | NANT | 0 | 0.81 |
| 14 | 5fdk_F_DG3_DC4 | NAN | NANT | 0 | 0.47 |
| 15 | 5fdk_F_DC4_DA5 | B12 | BB04 | 24 | 0.36 |
| 16 | 5fdk_F_DA5_DA6 | NAN | NANT | 0 | 0.23 |
| 17 | 5fdk_F_DA6_DT7 | NAN | NANT | 0 | 0.28 |
| 18 | 5fdk_F_DT7_DT8 | BBB | BB00 | 59 | 0.28 |
| 19 | 5fdk_F_DT8_DG9 | miB | BB15 | 39 | 0.37 |
| 20 | 5fdk_F_DG9_DC10 | NAN | NANT | 0 | 0.46 |
| 21 | 5fdk_F_DC10_DG11 | NAN | NANT | 0 | 0.53 |
| 22 | 5fdk_F_DG11_DT12 | NAN | NANT | 0 | 0.81 |
| 23 | 5fdk_G_DC2_DG3 | NAN | NANT | 0 | 0.79 |
| 24 | 5fdk_G_DG3_DC4 | NAN | NANT | 0 | 0.69 |
| 25 | 5fdk_G_DC4_DA5 | BBB | BB00 | 39 | 0.39 |
| 26 | 5fdk_G_DA5_DA6 | BBB | BB00 | 30 | 0.35 |
| 27 | 5fdk_G_DA6_DT7 | BBB | BB01 | 51 | 0.33 |
| 28 | 5fdk_G_DT7_DT8 | B-A | BA05 | 21 | 0.39 |
| 29 | 5fdk_G_DT8_DG9 | NAN | NANT | 0 | 0.33 |
| 30 | 5fdk_G_DG9_DC10 | NAN | NANT | 0 | 0.33 |
| 31 | 5fdk_G_DC10_DG11 | BBB | BB00 | 32 | 0.56 |
| 32 | 5fdk_G_DG11_DT12 | NAN | NANT | 0 | 1.01 |
| 33 | 5fdk_H_DA1_DC2 | NAN | NANT | 0 | 0.45 |
| 34 | 5fdk_H_DC2_DG3 | miB | BB13 | 22 | 0.81 |
| 35 | 5fdk_H_DG3_DC4 | BBB | BB00 | 22 | 0.53 |
| 36 | 5fdk_H_DC4_DA5 | NAN | NANT | 0 | 0.48 |
| 37 | 5fdk_H_DA5_DA6 | AAA | AA04 | 48 | 0.52 |
| 38 | 5fdk_H_DA6_DT7 | A-B | AB05 | 68 | 0.43 |
| 39 | 5fdk_H_DT7_DT8 | NAN | NANT | 0 | 0.81 |
| 40 | 5fdk_H_DT8_DG9 | BBB | BB01 | 8 | 0.49 |
| 41 | 5fdk_H_DG9_DC10 | NAN | NANT | 0 | 0.63 |
| 42 | 5fdk_H_DC10_DG11 | NAN | NANT | 0 | 0.94 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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