Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of Lin54 tesmin domain bound to DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5fd3_C_DG1_DA2 | BBB | BB00 | 65 | 0.19 |
| 02 | 5fd3_C_DA2_DG3 | BBB | BB00 | 78 | 0.14 |
| 03 | 5fd3_C_DG3_DT4 | BBB | BB00 | 77 | 0.30 |
| 04 | 5fd3_C_DT4_DT5 | BBB | BB00 | 73 | 0.21 |
| 05 | 5fd3_C_DT5_DT6 | B-A | BA05 | 93 | 0.14 |
| 06 | 5fd3_C_DT6_DG7 | A-B | AB03 | 57 | 0.25 |
| 07 | 5fd3_C_DG7_DA8 | BB2 | BB07 | 66 | 0.27 |
| 08 | 5fd3_C_DA8_DA9 | BBB | BB00 | 93 | 0.11 |
| 09 | 5fd3_C_DA9_DA10 | BBB | BB01 | 68 | 0.23 |
| 10 | 5fd3_C_DA10_DC11 | BBB | BB01 | 76 | 0.20 |
| 11 | 5fd3_C_DC11_DT12 | BBB | BB01 | 62 | 0.23 |
| 12 | 5fd3_D_DA2_DG3 | BBB | BB00 | 82 | 0.18 |
| 13 | 5fd3_D_DG3_DT4 | BBB | BB00 | 83 | 0.19 |
| 14 | 5fd3_D_DT4_DT5 | BBB | BB00 | 83 | 0.18 |
| 15 | 5fd3_D_DT5_DT6 | BBB | BB00 | 81 | 0.25 |
| 16 | 5fd3_D_DT6_DC7 | B-A | BA05 | 76 | 0.17 |
| 17 | 5fd3_D_DC7_DA8 | A-B | AB01 | 49 | 0.24 |
| 18 | 5fd3_D_DA8_DA9 | B12 | BB04 | 62 | 0.23 |
| 19 | 5fd3_D_DA9_DA10 | BBB | BB00 | 89 | 0.20 |
| 20 | 5fd3_D_DA10_DC11 | B-A | BA05 | 91 | 0.21 |
| 21 | 5fd3_D_DC11_DT12 | A-B | AB03 | 90 | 0.27 |
| 22 | 5fd3_D_DT12_DC13 | BBB | BB01 | 92 | 0.11 |
| 23 | 5fd3_H_DG1_DA2 | BBB | BB00 | 75 | 0.16 |
| 24 | 5fd3_H_DA2_DG3 | BBB | BB00 | 77 | 0.11 |
| 25 | 5fd3_H_DG3_DT4 | BBB | BB00 | 76 | 0.31 |
| 26 | 5fd3_H_DT4_DT5 | BBB | BB01 | 83 | 0.14 |
| 27 | 5fd3_H_DT5_DT6 | B-A | BA05 | 87 | 0.14 |
| 28 | 5fd3_H_DT6_DG7 | A-B | AB03 | 54 | 0.26 |
| 29 | 5fd3_H_DG7_DA8 | BB2 | BB07 | 69 | 0.30 |
| 30 | 5fd3_H_DA8_DA9 | BBB | BB00 | 95 | 0.11 |
| 31 | 5fd3_H_DA9_DA10 | BBB | BB01 | 68 | 0.22 |
| 32 | 5fd3_H_DA10_DC11 | BBB | BB01 | 76 | 0.19 |
| 33 | 5fd3_H_DC11_DT12 | BBB | BB01 | 62 | 0.23 |
| 34 | 5fd3_I_DA2_DG3 | BBB | BB00 | 86 | 0.18 |
| 35 | 5fd3_I_DG3_DT4 | BBB | BB00 | 77 | 0.21 |
| 36 | 5fd3_I_DT4_DT5 | BBB | BB00 | 79 | 0.22 |
| 37 | 5fd3_I_DT5_DT6 | BBB | BB00 | 83 | 0.19 |
| 38 | 5fd3_I_DT6_DC7 | B-A | BA05 | 84 | 0.17 |
| 39 | 5fd3_I_DC7_DA8 | A-B | AB01 | 55 | 0.22 |
| 40 | 5fd3_I_DA8_DA9 | B12 | BB04 | 54 | 0.25 |
| 41 | 5fd3_I_DA9_DA10 | BBB | BB00 | 85 | 0.22 |
| 42 | 5fd3_I_DA10_DC11 | B-A | BA05 | 91 | 0.23 |
| 43 | 5fd3_I_DC11_DT12 | A-B | AB03 | 90 | 0.26 |
| 44 | 5fd3_I_DT12_DC13 | BBB | BB01 | 89 | 0.15 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
Show
| Color by conformation group (pyramids) | |
|---|---|
| group | |||||||||
| visible |
| Color by NtC (balls) |
|---|
| A | ||||
|---|---|---|---|---|
| A-B | ||||
|---|---|---|---|---|
| B-A | ||||
|---|---|---|---|---|
| B | ||||
|---|---|---|---|---|
| IC | ||||
|---|---|---|---|---|
| OPN | ||||
|---|---|---|---|---|
| Z | ||||
|---|---|---|---|---|
| N | ||||
|---|---|---|---|---|