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Conformers: ABBIImiBZICOPNSYNN
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X-ray Structure of the MMTV-A Nucleosome Core Particle

Results of the assignment of 292 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015f99_I_DA-73_DT-72BBwBB11580.25 BB11
0025f99_I_DT-72_DC-71BBBBB00480.38 BB00
0035f99_I_DC-71_DT-70B12BB04840.18 BB04
0045f99_I_DT-70_DG-69B12BB04630.35 BB04
0055f99_I_DG-69_DC-68B12BB04530.27 BB04
0065f99_I_DC-68_DA-67BBBBB00660.27 BB00
0075f99_I_DA-67_DA-66BBBBB00840.23 BB00
0085f99_I_DA-66_DC-65BBwBB02710.22 BB02
0095f99_I_DC-65_DA-64BBwBB02510.33 BB02
0105f99_I_DA-64_DG-63BBwBB02590.33 BB02
0115f99_I_DG-63_DT-62BBBBB00600.23 BB00
0125f99_I_DT-62_DC-61BBwBB11860.27 BB11
0135f99_I_DC-61_DC-60NANNANT00.59 BB02
0145f99_I_DC-60_DT-59B12BB04810.22 BB04
0155f99_I_DT-59_DA-58B12BB04820.19 BB04
0165f99_I_DA-58_DA-57BBBBB00640.28 BB00
0175f99_I_DA-57_DC-56BBBBB00480.28 BB00
0185f99_I_DC-56_DA-55BBwBB02910.19 BB02
0195f99_I_DA-55_DT-54BBBBB00770.25 BB00
0205f99_I_DT-54_DT-53BBBBB00700.26 BB00
0215f99_I_DT-53_DC-52BBwBB02270.41 BB02
0225f99_I_DC-52_DA-51NANNANT00.77 BB17
0235f99_I_DA-51_DC-50NANNANT00.82 BB07
0245f99_I_DC-50_DC-49BBBBB00720.25 BB00
0255f99_I_DC-49_DT-48miBBB13930.17 BB13
0265f99_I_DT-48_DC-47BBwBB02220.63 BB02
0275f99_I_DC-47_DT-46NANNANT00.57 BB08
0285f99_I_DT-46_DT-45BBBBB00680.40 BB00
0295f99_I_DT-45_DG-44B12BB04730.29 BB04
0305f99_I_DG-44_DT-43BBBBB00900.18 BB00
0315f99_I_DT-43_DG-42BBBBB00900.18 BB00
0325f99_I_DG-42_DT-41BBwBB02620.22 BB02
0335f99_I_DT-41_DG-40BBwBB02570.25 BB02
0345f99_I_DG-40_DT-39BBwBB03630.42 BB03
0355f99_I_DT-39_DT-38BBBBB00140.44 BB00
0365f99_I_DT-38_DT-37BBwBB11580.41 BB11
0375f99_I_DT-37_DG-36BBBBB00220.47 BB00
0385f99_I_DG-36_DT-35BB2BB07490.27 BB07
0395f99_I_DT-35_DG-34BBBBB00620.35 BB00
0405f99_I_DG-34_DT-33BBBBB00680.35 BB00
0415f99_I_DT-33_DC-32BBBBB00900.21 BB00
0425f99_I_DC-32_DT-31B12BB04760.20 BB04
0435f99_I_DT-31_DG-30BBBBB00900.20 BB00
0445f99_I_DG-30_DT-29B12BB04750.29 BB04
0455f99_I_DT-29_DT-28BBBBB00770.30 BB00
0465f99_I_DT-28_DC-27BBBBB00820.23 BB00
0475f99_I_DC-27_DG-26BB2BB07460.26 BB07
0485f99_I_DG-26_DC-25BBBBB00770.28 BB00
0495f99_I_DC-25_DC-24BB2BB07800.22 BB07
0505f99_I_DC-24_DA-23BBBBB00860.28 BB00
0515f99_I_DA-23_DT-22BBwBB02340.28 BB02
0525f99_I_DT-22_DC-21BB2BB08560.38 BB08
0535f99_I_DC-21_DC-20NANNANT00.44 BB02
0545f99_I_DC-20_DC-19BBBBB00890.24 BB00
0555f99_I_DC-19_DG-18BBwBB11710.45 BB11
0565f99_I_DG-18_DT-17BBBBB00230.28 BB00
0575f99_I_DT-17_DC-16NANNANT00.31 BB02
0585f99_I_DC-16_DT-15BB2BB07340.41 BB07
0595f99_I_DT-15_DC-14BBBBB00740.26 BB00
0605f99_I_DC-14_DC-13B12BB04710.26 BB04
0615f99_I_DC-13_DG-12BBwBB02720.23 BB02
0625f99_I_DG-12_DC-11BBwBB02310.33 BB02
0635f99_I_DC-11_DT-10B12BB04690.22 BB04
0645f99_I_DT-10_DC-9BBwBB02310.16 BB02
0655f99_I_DC-9_DG-8BBBBB00350.34 BB00
0665f99_I_DG-8_DT-7BBBBB00440.35 BB00
0675f99_I_DT-7_DC-6BB2BB07190.37 BB07
0685f99_I_DC-6_DA-5B12BB04110.42 BB04
0695f99_I_DA-5_DC-4B12BB04580.19 BB04
0705f99_I_DC-4_DT-3BBBBB00620.19 BB00
0715f99_I_DT-3_DT-2BBBBB00930.14 BB00
0725f99_I_DT-2_DA-1B12BB04820.19 BB04
0735f99_I_DA-1_DT0BBwBB02670.20 BB02
0745f99_I_DT0_DC1BBBBB00740.22 BB00
0755f99_I_DC1_DC2BBwBB02860.18 BB02
0765f99_I_DC2_DT3BBBBB00730.21 BB00
0775f99_I_DT3_DT4BBBBB00720.24 BB00
0785f99_I_DT4_DC5BBBBB00340.27 BB00
0795f99_I_DC5_DA6BB2BB07680.24 BB07
0805f99_I_DA6_DC7BBBBB00650.23 BB00
0815f99_I_DC7_DT8B12BB04870.17 BB04
0825f99_I_DT8_DT9BBwBB02800.24 BB02
0835f99_I_DT9_DT10BBwBB02550.25 BB02
0845f99_I_DT10_DC11BBBBB00780.12 BB00
0855f99_I_DC11_DC12BBwBB02290.35 BB02
0865f99_I_DC12_DA13B12BB04230.30 BB04
0875f99_I_DA13_DG14BBBBB00820.22 BB00
0885f99_I_DG14_DA15BB2BB07470.32 BB07
0895f99_I_DA15_DG16BBBBB00670.26 BB00
0905f99_I_DG16_DG17BB2BB07920.23 BB07
0915f99_I_DG17_DG18BBBBB00850.12 BB00
0925f99_I_DG18_DT19BBwBB02500.27 BB02
0935f99_I_DT19_DC20BBwBB02550.23 BB02
0945f99_I_DC20_DC21BBwBB02310.30 BB02
0955f99_I_DC21_DC22BBwBB02570.23 BB02
0965f99_I_DC22_DC23BBBBB00620.26 BB00
0975f99_I_DC23_DC24BBBBB00930.12 BB00
0985f99_I_DC24_DC25NANNANT00.50 BB02
0995f99_I_DC25_DG26BBBBB00350.46 BB00
1005f99_I_DG26_DC27BBBBB00710.24 BB00
1015f99_I_DC27_DA28BB2BB07830.29 BB07
1025f99_I_DA28_DG29BBBBB00520.29 BB00
1035f99_I_DG29_DA30BB2BB07760.25 BB07
1045f99_I_DA30_DC31BBwBB02760.21 BB02
1055f99_I_DC31_DC32BBBBB00880.26 BB00
1065f99_I_DC32_DC33B12BB04320.28 BB04
1075f99_I_DC33_DC34BBBBB00850.17 BB00
1085f99_I_DC34_DG35NANNANT00.63 BB08
1095f99_I_DG35_DG36NANNANT00.48 BB13
1105f99_I_DG36_DC37BBBBB00450.30 BB00
1115f99_I_DC37_DG38B12BB04680.32 BB04
1125f99_I_DG38_DA39B12BB04680.27 BB04
1135f99_I_DA39_DC40BBBBB00260.33 BB00
1145f99_I_DC40_DC41NANNANT00.32 BB02
1155f99_I_DC41_DC42BBwBB02580.45 BB02
1165f99_I_DC42_DT43miBBB13900.18 BB13
1175f99_I_DT43_DC44NANNANT00.52 BB15
1185f99_I_DC44_DA45B12BB04600.28 BB04
1195f99_I_DA45_DG46BBBBB00770.14 BB00
1205f99_I_DG46_DG47BB2BB07710.27 BB07
1215f99_I_DG47_DT48BBBBB00810.20 BB00
1225f99_I_DT48_DC49BBBBB00840.24 BB00
1235f99_I_DC49_DG50BBBBB00760.29 BB00
1245f99_I_DG50_DG51NANNANT00.59 BB02
1255f99_I_DG51_DC52BBwBB03370.40 BB03
1265f99_I_DC52_DC53NANNANT00.30 BB17
1275f99_I_DC53_DG54miBBB12300.62 BB12
1285f99_I_DG54_DA55NANNANT00.83 BB10
1295f99_I_DA55_DC56BB2BB07830.37 BB07
1305f99_I_DC56_DT57BBBBB00840.15 BB00
1315f99_I_DT57_DG58NANNANT00.76 BB07
1325f99_I_DG58_DC59BBBBB00830.19 BB00
1335f99_I_DC59_DG60BBwBB11180.63 BB11
1345f99_I_DG60_DG61BBBBB00370.40 BB00
1355f99_I_DG61_DC62miBBB13790.31 BB13
1365f99_I_DC62_DA63BBwBB03400.45 BB03
1375f99_I_DA63_DC64BBwBB02100.48 BB02
1385f99_I_DC64_DA65BBBBB00640.40 BB00
1395f99_I_DA65_DG66BBBBB00820.26 BB00
1405f99_I_DG66_DT67BBwBB11930.22 BB11
1415f99_I_DT67_DT68BBBBB00320.47 BB00
1425f99_I_DT68_DT69NANNANT00.60 BB02
1435f99_I_DT69_DT70NANNANT00.53 BB11
1445f99_I_DT70_DG71BBwBB02280.47 BB02
1455f99_I_DG71_DA72BBwBB02270.46 BB02
1465f99_I_DA72_DT73BBwBB03720.29 BB03
1475f99_J_DA-73_DT-72NANNANT00.38 BB03
1485f99_J_DT-72_DC-71BBwBB11690.36 BB11
1495f99_J_DC-71_DA-70NANNANT00.51 BB03
1505f99_J_DA-70_DA-69BBwBB16430.59 BB16
1515f99_J_DA-69_DA-68BBwBB02320.34 BB02
1525f99_J_DA-68_DA-67BBBBB00740.30 BB00
1535f99_J_DA-67_DC-66NANNANT00.26 BB11
1545f99_J_DC-66_DT-65BBwBB02200.37 BB02
1555f99_J_DT-65_DG-64NANNANT00.76 BB02
1565f99_J_DG-64_DT-63BBwBB03430.23 BB03
1575f99_J_DT-63_DG-62BBwBB02430.63 BB02
1585f99_J_DG-62_DC-61BBBBB00880.16 BB00
1595f99_J_DC-61_DC-60BBBBB00890.22 BB00
1605f99_J_DC-60_DG-59BBwBB11420.52 BB11
1615f99_J_DG-59_DC-58BBBBB00100.60 BB00
1625f99_J_DC-58_DA-57NANNANT00.77 BB02
1635f99_J_DA-57_DG-56BBBBB00690.27 BB00
1645f99_J_DG-56_DT-55BBwBB11910.21 BB11
1655f99_J_DT-55_DC-54BBwBB02290.23 BB02
1665f99_J_DC-54_DG-53BBBBB00680.42 BB00
1675f99_J_DG-53_DG-52NANNANT00.61 BB02
1685f99_J_DG-52_DC-51BBwBB17520.42 BB17
1695f99_J_DC-51_DC-50BBwBB02280.49 BB02
1705f99_J_DC-50_DG-49BBBBB00170.33 BB00
1715f99_J_DG-49_DA-48BBBBB00720.23 BB00
1725f99_J_DA-48_DC-47NANNANT00.63 BB02
1735f99_J_DC-47_DC-46NANNANT00.50 BB04
1745f99_J_DC-46_DT-45BBBBB00840.15 BB00
1755f99_J_DT-45_DG-44BB2BB07680.19 BB07
1765f99_J_DG-44_DA-43B12BB04690.18 BB04
1775f99_J_DA-43_DG-42B12BB04900.20 BB04
1785f99_J_DG-42_DG-41BBwBB02600.23 BB02
1795f99_J_DG-41_DG-40BBBBB00770.14 BB00
1805f99_J_DG-40_DT-39B12BB04770.27 BB04
1815f99_J_DT-39_DC-38BBwBB02740.27 BB02
1825f99_J_DC-38_DG-37BBwBB11590.43 BB11
1835f99_J_DG-37_DC-36BBBBB00710.36 BB00
1845f99_J_DC-36_DC-35BB2BB07840.30 BB07
1855f99_J_DC-35_DG-34B12BB04640.39 BB04
1865f99_J_DG-34_DG-33B12BB04800.24 BB04
1875f99_J_DG-33_DG-32BBwBB02600.24 BB02
1885f99_J_DG-32_DG-31BBBBB00850.19 BB00
1895f99_J_DG-31_DT-30BBwBB02320.29 BB02
1905f99_J_DT-30_DC-29BBBBB00810.24 BB00
1915f99_J_DC-29_DT-28NANNANT00.31 BB02
1925f99_J_DT-28_DG-27NANNANT00.52 BB08
1935f99_J_DG-27_DC-26B12BB04810.29 BB04
1945f99_J_DC-26_DG-25B12BB04530.45 BB04
1955f99_J_DG-25_DG-24BB2BB07690.35 BB07
1965f99_J_DG-24_DG-23BBBBB00840.23 BB00
1975f99_J_DG-23_DG-22BBwBB02890.19 BB02
1985f99_J_DG-22_DG-21BBBBB00560.28 BB00
1995f99_J_DG-21_DG-20B12BB04770.13 BB04
2005f99_J_DG-20_DA-19BBBBB00830.18 BB00
2015f99_J_DA-19_DC-18BBBBB00790.20 BB00
2025f99_J_DC-18_DC-17B12BB04780.20 BB04
2035f99_J_DC-17_DC-16BBBBB00810.19 BB00
2045f99_J_DC-16_DT-15BB2BB07240.42 BB07
2055f99_J_DT-15_DC-14BBBBB00720.22 BB00
2065f99_J_DC-14_DT-13BBBBB00670.32 BB00
2075f99_J_DT-13_DG-12BBBBB00830.16 BB00
2085f99_J_DG-12_DG-11B12BB04390.26 BB04
2095f99_J_DG-11_DA-10B12BB04860.13 BB04
2105f99_J_DA-10_DA-9BBwBB02580.30 BB02
2115f99_J_DA-9_DA-8BBBBB00820.17 BB00
2125f99_J_DA-8_DG-7BBBBB00900.16 BB00
2135f99_J_DG-7_DT-6B12BB04840.23 BB04
2145f99_J_DT-6_DG-5BB2BB07170.40 BB07
2155f99_J_DG-5_DA-4BB2BB07880.23 BB07
2165f99_J_DA-4_DA-3BBBBB00880.21 BB00
2175f99_J_DA-3_DG-2BBBBB00680.20 BB00
2185f99_J_DG-2_DG-1B12BB04550.18 BB04
2195f99_J_DG-1_DA0miBBB10320.32 BB10
2205f99_J_DA0_DT1BBBBB00860.22 BB00
2215f99_J_DT1_DA2B12BB04910.19 BB04
2225f99_J_DA2_DA3B12BB04820.23 BB04
2235f99_J_DA3_DG4B12BB04850.16 BB04
2245f99_J_DG4_DT5BBBBB00830.28 BB00
2255f99_J_DT5_DG6BB2BB07400.30 BB07
2265f99_J_DG6_DA7miBBB13880.32 BB13
2275f99_J_DA7_DC8BBBBB00460.34 BB00
2285f99_J_DC8_DG9BBBBB00800.18 BB00
2295f99_J_DG9_DA10BBwBB02640.15 BB02
2305f99_J_DA10_DG11B12BB04820.23 BB04
2315f99_J_DG11_DC12NANNANT00.31 BB02
2325f99_J_DC12_DG13B12BB04440.32 BB04
2335f99_J_DG13_DG14BBwBB11840.27 BB11
2345f99_J_DG14_DA15BB2BB07370.32 BB07
2355f99_J_DA15_DG16B12BB04620.40 BB04
2365f99_J_DG16_DA17BB2BB07660.23 BB07
2375f99_J_DA17_DC18BBBBB00910.20 BB00
2385f99_J_DC18_DG19B12BB04900.13 BB04
2395f99_J_DG19_DG20BBBBB00320.36 BB00
2405f99_J_DG20_DG21BBwBB02480.29 BB02
2415f99_J_DG21_DA22BBBBB00850.19 BB00
2425f99_J_DA22_DT23miBBB13720.21 BB13
2435f99_J_DT23_DG24BBwBB17420.42 BB17
2445f99_J_DG24_DG25BBBBB00720.32 BB00
2455f99_J_DG25_DC26BB2BB07360.28 BB07
2465f99_J_DC26_DG27BBBBB00650.34 BB00
2475f99_J_DG27_DA28B12BB04670.30 BB04
2485f99_J_DA28_DA29BBBBB00670.28 BB00
2495f99_J_DA29_DC30NANNANT00.40 BB02
2505f99_J_DC30_DA31BBBBB00280.46 BB00
2515f99_J_DA31_DG32B12BB04960.17 BB04
2525f99_J_DG32_DA33NANNANT00.35 BB17
2535f99_J_DA33_DC34BBBBB00730.25 BB00
2545f99_J_DC34_DA35NANNANT00.62 BB11
2555f99_J_DA35_DC36NANNANT00.64 BB02
2565f99_J_DC36_DA37B12BB04760.28 BB04
2575f99_J_DA37_DA38BBBBB00690.27 BB00
2585f99_J_DA38_DA39B12BB04540.25 BB04
2595f99_J_DA39_DC40NANNANT00.50 BB02
2605f99_J_DC40_DA41BBBBB00140.48 BB00
2615f99_J_DA41_DC42BBBBB00790.29 BB00
2625f99_J_DC42_DA43BBwBB11740.28 BB11
2635f99_J_DA43_DC44BBBBB00270.49 BB00
2645f99_J_DC44_DA45B12BB04560.36 BB04
2655f99_J_DA45_DA46BBBBB00590.29 BB00
2665f99_J_DA46_DG47BB2BB07320.24 BB07
2675f99_J_DG47_DA48BBBBB00820.17 BB00
2685f99_J_DA48_DG49B12BB04780.19 BB04
2695f99_J_DG49_DG50B12BB04800.25 BB04
2705f99_J_DG50_DT51BBwBB02680.29 BB02
2715f99_J_DT51_DG52BBwBB03460.29 BB03
2725f99_J_DG52_DA53NANNANT00.41 BB02
2735f99_J_DA53_DA54BBwBB11730.46 BB11
2745f99_J_DA54_DT55NANNANT00.53 BB02
2755f99_J_DT55_DG56NANNANT00.55 BB02
2765f99_J_DG56_DT57BBBBB00820.20 BB00
2775f99_J_DT57_DT58BBBBB00720.38 BB00
2785f99_J_DT58_DA59B12BB05650.41 BB05
2795f99_J_DA59_DG60BBBBB00300.44 BB00
2805f99_J_DG60_DG61BBBBB00780.28 BB00
2815f99_J_DG61_DA62miBBB13650.31 BB13
2825f99_J_DA62_DC63NANNANT00.64 BB02
2835f99_J_DC63_DT64BBwBB02610.28 BB02
2845f99_J_DT64_DG65BBwBB03650.27 BB03
2855f99_J_DG65_DT66BBBBB00180.37 BB00
2865f99_J_DT66_DT67BBBBB00470.35 BB00
2875f99_J_DT67_DG68BBBBB00650.30 BB00
2885f99_J_DG68_DC69BBBBB00500.29 BB00
2895f99_J_DC69_DA70B12BB04550.28 BB04
2905f99_J_DA70_DG71BBBBB00940.16 BB00
2915f99_J_DG71_DA72BBBBB00730.37 BB00
2925f99_J_DA72_DT73BBwBB03850.22 BB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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