Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Glucocorticoid receptor DNA binding domain - CCL2 NF-kB response element complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5e6c_C_DA1_DG2 | BBB | BB00 | 19 | 0.48 |
| 02 | 5e6c_C_DG2_DT3 | B-A | BA08 | 65 | 0.37 |
| 03 | 5e6c_C_DT3_DG4 | A-B | AB01 | 40 | 0.37 |
| 04 | 5e6c_C_DG4_DG5 | B-A | BA13 | 15 | 0.34 |
| 05 | 5e6c_C_DG5_DA6 | NAN | NANT | 0 | 0.48 |
| 06 | 5e6c_C_DA6_DA7 | BBB | BB00 | 58 | 0.25 |
| 07 | 5e6c_C_DA7_DA8 | BBB | BB00 | 83 | 0.15 |
| 08 | 5e6c_C_DA8_DT9 | BBB | BB00 | 43 | 0.20 |
| 09 | 5e6c_C_DT9_DT10 | BBB | BB00 | 41 | 0.27 |
| 10 | 5e6c_C_DT10_DC11 | BBB | BB01 | 78 | 0.13 |
| 11 | 5e6c_C_DC11_DC12 | BBB | BB00 | 68 | 0.22 |
| 12 | 5e6c_C_DC12_DC13 | BBw | BB02 | 15 | 0.38 |
| 13 | 5e6c_C_DC13_DA14 | BBw | BB02 | 56 | 0.30 |
| 14 | 5e6c_C_DA14_DC15 | NAN | NANT | 0 | 0.57 |
| 15 | 5e6c_C_DC15_DT16 | BBw | BB02 | 10 | 0.53 |
| 16 | 5e6c_D_DA1_DG2 | NAN | NANT | 0 | 0.72 |
| 17 | 5e6c_D_DG2_DT3 | BB2 | BB07 | 47 | 0.34 |
| 18 | 5e6c_D_DT3_DG4 | B-A | BA08 | 69 | 0.40 |
| 19 | 5e6c_D_DG4_DG5 | A-B | AB03 | 51 | 0.27 |
| 20 | 5e6c_D_DG5_DG6 | BBB | BB00 | 71 | 0.29 |
| 21 | 5e6c_D_DG6_DA7 | BBB | BB00 | 78 | 0.16 |
| 22 | 5e6c_D_DA7_DA8 | BBB | BB00 | 84 | 0.10 |
| 23 | 5e6c_D_DA8_DT9 | B12 | BB04 | 71 | 0.22 |
| 24 | 5e6c_D_DT9_DT10 | BBB | BB00 | 81 | 0.13 |
| 25 | 5e6c_D_DT10_DT11 | B-A | BA05 | 85 | 0.21 |
| 26 | 5e6c_D_DT11_DC12 | A-B | AB03 | 79 | 0.19 |
| 27 | 5e6c_D_DC12_DC13 | B-A | BA08 | 67 | 0.29 |
| 28 | 5e6c_D_DC13_DA14 | A-B | AB05 | 13 | 0.23 |
| 29 | 5e6c_D_DA14_DC15 | BBB | BB00 | 73 | 0.21 |
| 30 | 5e6c_D_DC15_DT16 | BBw | BB02 | 48 | 0.31 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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