Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Glucocorticoid receptor DNA binding domain - PLAU NF-kB response element complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5e6a_C_DC1_DT2 | AAA | AA00 | 86 | 0.26 |
| 02 | 5e6a_C_DT2_DG3 | A-B | AB01 | 76 | 0.30 |
| 03 | 5e6a_C_DG3_DG4 | B12 | BB04 | 75 | 0.24 |
| 04 | 5e6a_C_DG4_DG5 | BBB | BB00 | 91 | 0.19 |
| 05 | 5e6a_C_DG5_DA6 | B12 | BB04 | 68 | 0.18 |
| 06 | 5e6a_C_DA6_DA7 | BBB | BB00 | 83 | 0.12 |
| 07 | 5e6a_C_DA7_DT8 | BBB | BB01 | 54 | 0.15 |
| 08 | 5e6a_C_DT8_DT9 | BBB | BB01 | 70 | 0.22 |
| 09 | 5e6a_C_DT9_DT10 | BBB | BB01 | 66 | 0.17 |
| 10 | 5e6a_C_DT10_DC11 | BBB | BB01 | 70 | 0.17 |
| 11 | 5e6a_C_DC11_DC12 | BBB | BB00 | 56 | 0.22 |
| 12 | 5e6a_C_DC12_DT13 | BBB | BB01 | 66 | 0.19 |
| 13 | 5e6a_C_DT13_DG14 | BBB | BB01 | 69 | 0.23 |
| 14 | 5e6a_C_DG14_DA15 | BBB | BB00 | 62 | 0.33 |
| 15 | 5e6a_C_DA15_DT16 | BBB | BB00 | 85 | 0.20 |
| 16 | 5e6a_D_DA1_DT2 | NAN | NANT | 0 | 0.57 |
| 17 | 5e6a_D_DT2_DC3 | BBB | BB01 | 30 | 0.51 |
| 18 | 5e6a_D_DC3_DA4 | BBB | BB00 | 13 | 0.28 |
| 19 | 5e6a_D_DA4_DG5 | B12 | BB04 | 91 | 0.12 |
| 20 | 5e6a_D_DG5_DG6 | BBB | BB01 | 85 | 0.12 |
| 21 | 5e6a_D_DG6_DA7 | BBB | BB00 | 73 | 0.21 |
| 22 | 5e6a_D_DA7_DA8 | BBB | BB00 | 73 | 0.12 |
| 23 | 5e6a_D_DA8_DA9 | BBB | BB00 | 80 | 0.23 |
| 24 | 5e6a_D_DA9_DT10 | B-A | BA08 | 64 | 0.37 |
| 25 | 5e6a_D_DT10_DT11 | BBB | BB01 | 62 | 0.20 |
| 26 | 5e6a_D_DT11_DC12 | B-A | BA05 | 79 | 0.24 |
| 27 | 5e6a_D_DC12_DC13 | BBB | BB01 | 41 | 0.28 |
| 28 | 5e6a_D_DC13_DC14 | B-A | BA01 | 53 | 0.16 |
| 29 | 5e6a_D_DC14_DA15 | A-B | AB01 | 82 | 0.17 |
| 30 | 5e6a_D_DA15_DG16 | BBB | BB00 | 75 | 0.16 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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