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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure the Escherichia coli Cas1-Cas2 complex bound to protospacer DNA

Results of the assignment of 54 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015ds4_G_DA1_DA2BBBBB00740.19 BB00
025ds4_G_DA2_DA3BBBBB00930.14 BB00
035ds4_G_DA3_DC4B12BB04490.20 BB04
045ds4_G_DC4_DA5BBBBB00550.28 BB00
055ds4_G_DA5_DC6B-ABA05850.15 BA05
065ds4_G_DC6_DC7A-BAB01250.30 AB01
075ds4_G_DC7_DA8B-ABA08790.26 BA08
085ds4_G_DA8_DG9NANNANT00.50 AB02
095ds4_G_DG9_DA10A-BAB01700.23 AB01
105ds4_G_DA10_DA11BBBBB00770.23 BB00
115ds4_G_DA11_DC12B-ABA01610.16 BA01
125ds4_G_DC12_DG13A-BAB01800.20 AB01
135ds4_G_DG13_DA14B12BB04790.18 BB04
145ds4_G_DA14_DG15B-ABA01400.26 BA01
155ds4_G_DG15_DT16A-BAB01390.33 AB01
165ds4_G_DT16_DA17B-ABA05180.35 BA05
175ds4_G_DA17_DG18BBBBB01690.23 BB01
185ds4_G_DG18_DT19BBBBB00580.27 BB00
195ds4_G_DT19_DA20BBBBB00930.13 BB00
205ds4_G_DA20_DA21B-ABA01700.24 BA01
215ds4_G_DA21_DA22AAwAA01240.47 AA01
225ds4_G_DA22_DT23A-BAB01100.39 AB01
235ds4_G_DT23_DT24NANNANT01.31 OP22
245ds4_G_DT24_DG25NANNANT01.23 BB03
255ds4_G_DG25_DG26NANNANT01.37 BB10
265ds4_G_DG26_DG27NANNANT00.66 BB03
275ds4_G_DG27_DC28NANNANT01.31 OP1S
285ds4_H_DA1_DT2B-ABA10640.36 BA10
295ds4_H_DT2_DT3NANNANT00.52 AB04
305ds4_H_DT3_DT4BBBBB01600.23 BB01
315ds4_H_DT4_DA5BBBBB00700.25 BB00
325ds4_H_DA5_DC6BBBBB01750.23 BB01
335ds4_H_DC6_DT7BBBBB00250.25 BB00
345ds4_H_DT7_DA8miBBB13830.36 BB13
355ds4_H_DA8_DC9BBBBB01380.49 BB01
365ds4_H_DC9_DT10BBBBB00260.33 BB00
375ds4_H_DT10_DC11BBBBB00830.23 BB00
385ds4_H_DC11_DG12B-ABA01270.22 BA01
395ds4_H_DG12_DT13NANNANT00.46 AA02
405ds4_H_DT13_DT14BBBBB01740.22 BB01
415ds4_H_DT14_DC15B-ABA05830.20 BA05
425ds4_H_DC15_DT16BBBBB01600.17 BB01
435ds4_H_DT16_DG17BBBBB00660.28 BB00
445ds4_H_DG17_DG18B-ABA01280.26 BA01
455ds4_H_DG18_DT19NANNANT00.58 BB02
465ds4_H_DT19_DG20BBBBB00420.38 BB00
475ds4_H_DG20_DT21BBBBB00780.29 BB00
485ds4_H_DT21_DT22B-ABA01440.20 BA01
495ds4_H_DT22_DT23A-BAB01580.25 AB01
505ds4_H_DT23_DC24OPNOP19530.49 OP19
515ds4_H_DC24_DT25NANNANT00.92 IC04
525ds4_H_DT25_DC26NANNANT00.58 OP22
535ds4_H_DC26_DG27BBBBB00320.45 BB00
545ds4_H_DG27_DT28NANNANT01.82 BB1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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