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Conformers: ABBIImiBZICOPNSYNN
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Nucleosome core particle containing adducts of ruthenium(II)-toluene PTA complex

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015dnm_I_DA-72_DT-71NANNANT00.49 AB04
0025dnm_I_DT-71_DC-70BBBBB00370.26 BB00
0035dnm_I_DC-70_DA-69miBBB10900.16 BB10
0045dnm_I_DA-69_DA-68BB2BB07830.14 BB07
0055dnm_I_DA-68_DT-67B-ABA08390.46 BA08
0065dnm_I_DT-67_DA-66A-BAB03570.33 AB03
0075dnm_I_DA-66_DT-65BBBBB00850.14 BB00
0085dnm_I_DT-65_DC-64BBBBB00580.19 BB00
0095dnm_I_DC-64_DC-63B-ABA10210.38 BA10
0105dnm_I_DC-63_DA-62NANNANT00.43 BB10
0115dnm_I_DA-62_DC-61BBBBB00850.17 BB00
0125dnm_I_DC-61_DC-60BBBBB00870.20 BB00
0135dnm_I_DC-60_DT-59miBBB10680.22 BB10
0145dnm_I_DT-59_DG-58B12BB04680.36 BB04
0155dnm_I_DG-58_DC-57miBBB10560.25 BB10
0165dnm_I_DC-57_DA-56BB2BB07320.33 BB07
0175dnm_I_DA-56_DG-55miBBB10530.30 BB10
0185dnm_I_DG-55_DA-54BB2BB07490.35 BB07
0195dnm_I_DA-54_DT-53B12BB04370.29 BB04
0205dnm_I_DT-53_DA-52BBBBB00590.44 BB00
0215dnm_I_DA-52_DC-51miBBB10510.33 BB10
0225dnm_I_DC-51_DT-50miBBB14740.24 BB14
0235dnm_I_DT-50_DA-49BBBBB00440.26 BB00
0245dnm_I_DA-49_DC-48BBBBB01810.25 BB01
0255dnm_I_DC-48_DC-47NANNANT00.28 BB10
0265dnm_I_DC-47_DA-46BB2BB07400.33 BB07
0275dnm_I_DA-46_DA-45B12BB0480.42 BB04
0285dnm_I_DA-45_DA-44B-ABA13420.41 BA13
0295dnm_I_DA-44_DA-43NANNANT00.32 AB05
0305dnm_I_DA-43_DG-42BBBBB00750.17 BB00
0315dnm_I_DG-42_DT-41BBBBB00710.19 BB00
0325dnm_I_DT-41_DG-40BBBBB00750.20 BB00
0335dnm_I_DG-40_DT-39miBBB10850.31 BB10
0345dnm_I_DT-39_DA-38BBBBB00750.34 BB00
0355dnm_I_DA-38_DT-37BBBBB00670.23 BB00
0365dnm_I_DT-37_DT-36BBBBB00680.33 BB00
0375dnm_I_DT-36_DT-35BBBBB00910.17 BB00
0385dnm_I_DT-35_DG-34BB2BB07560.28 BB07
0395dnm_I_DG-34_DG-33BBBBB00770.27 BB00
0405dnm_I_DG-33_DA-32B12BB04140.31 BB04
0415dnm_I_DA-32_DA-31miBBB14410.36 BB14
0425dnm_I_DA-31_DA-30miBBB10820.21 BB10
0435dnm_I_DA-30_DC-29B12BB04630.27 BB04
0445dnm_I_DC-29_DT-28BBwBB17820.25 BB17
0455dnm_I_DT-28_DG-27NANNANT00.36 BB07
0465dnm_I_DG-27_DC-26BBBBB00540.28 BB00
0475dnm_I_DC-26_DT-25BB2BB08460.47 BB08
0485dnm_I_DT-25_DC-24BBBBB00380.67 BB00
0495dnm_I_DC-24_DC-23BB2BB07650.22 BB07
0505dnm_I_DC-23_DA-22BBBBB00660.39 BB00
0515dnm_I_DA-22_DT-21BBBBB00760.21 BB00
0525dnm_I_DT-21_DC-20BBBBB00210.18 BB00
0535dnm_I_DC-20_DA-19B12BB04740.21 BB04
0545dnm_I_DA-19_DA-18BBBBB00140.28 BB00
0555dnm_I_DA-18_DA-17miBBB10770.25 BB10
0565dnm_I_DA-17_DA-16BBBBB00710.33 BB00
0575dnm_I_DA-16_DG-15NANNANT00.40 BB02
0585dnm_I_DG-15_DG-14BB2BB07270.39 BB07
0595dnm_I_DG-14_DC-13B12BB04140.28 BB04
0605dnm_I_DC-13_DA-12BB2BB07780.30 BB07
0615dnm_I_DA-12_DT-11B-ABA01420.23 BA01
0625dnm_I_DT-11_DG-10NANNANT00.54 BB10
0635dnm_I_DG-10_DT-9miBBB14690.36 BB14
0645dnm_I_DT-9_DT-8BBBBB00710.20 BB00
0655dnm_I_DT-8_DC-7BBBBB00760.19 BB00
0665dnm_I_DC-7_DA-6BB2BB07760.33 BB07
0675dnm_I_DA-6_DG-5miBBB15340.37 BB15
0685dnm_I_DG-5_DC-4BB2BB07640.26 BB07
0695dnm_I_DC-4_DT-3BBBBB00770.23 BB00
0705dnm_I_DT-3_DG-2BBBBB00800.23 BB00
0715dnm_I_DG-2_DA-1B12BB04920.17 BB04
0725dnm_I_DA-1_DA0BBBBB00720.11 BB00
0735dnm_I_DA0_DT1BBBBB00800.19 BB00
0745dnm_I_DT1_DC2BBBBB00720.16 BB00
0755dnm_I_DC2_DA3B12BB04420.25 BB04
0765dnm_I_DA3_DG4miBBB10770.35 BB10
0775dnm_I_DG4_DC5BBBBB00670.20 BB00
0785dnm_I_DC5_DT6BB2BB07530.25 BB07
0795dnm_I_DT6_DG7B12BB04450.43 BB04
0805dnm_I_DG7_DA8B12BB04370.26 BB04
0815dnm_I_DA8_DA9BBBBB00620.20 BB00
0825dnm_I_DA9_DC10BBBBB00550.22 BB00
0835dnm_I_DC10_DA11miBBB10390.38 BB10
0845dnm_I_DA11_DT12BBBBB00390.18 BB00
0855dnm_I_DT12_DG13B12BB04930.20 BB04
0865dnm_I_DG13_DC14BBBBB01700.17 BB01
0875dnm_I_DC14_DC15NANNANT00.48 BB07
0885dnm_I_DC15_DT16BBBBB00290.22 BB00
0895dnm_I_DT16_DT17BBBBB00330.35 BB00
0905dnm_I_DT17_DT18BBBBB00650.17 BB00
0915dnm_I_DT18_DT19BBBBB00820.16 BB00
0925dnm_I_DT19_DG20BBBBB00530.29 BB00
0935dnm_I_DG20_DA21miBBB10710.38 BB10
0945dnm_I_DA21_DT22NANNANT00.63 BB17
0955dnm_I_DT22_DG23NANNANT00.67 BB03
0965dnm_I_DG23_DG24NANNANT00.66 BB03
0975dnm_I_DG24_DA25BB2BB07490.39 BB07
0985dnm_I_DA25_DG26BBBBB00770.17 BB00
0995dnm_I_DG26_DC27BB2BB07420.23 BB07
1005dnm_I_DC27_DA28B12BB04110.51 BB04
1015dnm_I_DA28_DG29BB2BB07460.28 BB07
1025dnm_I_DG29_DT30NANNANT00.48 BA08
1035dnm_I_DT30_DT31BBBBB01170.26 BB01
1045dnm_I_DT31_DT32NANNANT00.31 BA08
1055dnm_I_DT32_DC33BBwBB17590.21 BB17
1065dnm_I_DC33_DC34B12BB04300.33 BB04
1075dnm_I_DC34_DA35BB2BB07570.24 BB07
1085dnm_I_DA35_DA36BBBBB00400.31 BB00
1095dnm_I_DA36_DA37B12BB04840.14 BB04
1105dnm_I_DA37_DT38BBBBB00770.28 BB00
1115dnm_I_DT38_DA39BBBBB00660.21 BB00
1125dnm_I_DA39_DC40miBBB10680.26 BB10
1135dnm_I_DC40_DA41BBBBB00330.23 BB00
1145dnm_I_DA41_DC42miBBB10330.42 BB10
1155dnm_I_DC42_DT43BBwBB17380.24 BB17
1165dnm_I_DT43_DT44miBBB14540.42 BB14
1175dnm_I_DT44_DT45NANNANT00.59 AB03
1185dnm_I_DT45_DT46A-BAB02470.43 AB02
1195dnm_I_DT46_DG47B12BB04590.35 BB04
1205dnm_I_DG47_DG48B12BB04800.28 BB04
1215dnm_I_DG48_DT49B12BB04440.31 BB04
1225dnm_I_DT49_DA50miBBB10720.25 BB10
1235dnm_I_DA50_DG51NANNANT00.29 BB10
1245dnm_I_DG51_DT52NANNANT00.35 AB03
1255dnm_I_DT52_DA53BBBBB01110.41 BB01
1265dnm_I_DA53_DT54miBBB14760.33 BB14
1275dnm_I_DT54_DC55BBBBB00480.27 BB00
1285dnm_I_DC55_DT56BBBBB00550.27 BB00
1295dnm_I_DT56_DG57BB2BB07610.34 BB07
1305dnm_I_DG57_DC58BBBBB00370.28 BB00
1315dnm_I_DC58_DA59BB2BB07710.37 BB07
1325dnm_I_DA59_DG60NANNANT00.45 BB14
1335dnm_I_DG60_DG61NANNANT00.38 BB00
1345dnm_I_DG61_DT62BBBBB00210.36 BB00
1355dnm_I_DT62_DG63BBwBB17630.35 BB17
1365dnm_I_DG63_DG64miBBB14410.27 BB14
1375dnm_I_DG64_DA65miBBB14820.31 BB14
1385dnm_I_DA65_DT66BBBBB00200.34 BB00
1395dnm_I_DT66_DA67NANNANT00.39 BB15
1405dnm_I_DA67_DT68BBBBB00780.17 BB00
1415dnm_I_DT68_DT69BBBBB00620.20 BB00
1425dnm_I_DT69_DG70BBBBB00810.20 BB00
1435dnm_I_DG70_DA71miBBB10650.34 BB10
1445dnm_I_DA71_DT72B-ABA05100.22 BA05
1455dnm_J_DA-72_DT-71NANNANT00.65 AA04
1465dnm_J_DT-71_DC-70A-BAB02580.46 AB02
1475dnm_J_DC-70_DA-69miBBB10730.27 BB10
1485dnm_J_DA-69_DA-68BB2BB07690.21 BB07
1495dnm_J_DA-68_DT-67BBBBB00710.22 BB00
1505dnm_J_DT-67_DA-66B12BB04470.26 BB04
1515dnm_J_DA-66_DT-65BBBBB01860.15 BB01
1525dnm_J_DT-65_DC-64B-ABA01450.18 BA01
1535dnm_J_DC-64_DC-63A-BAB03730.21 AB03
1545dnm_J_DC-63_DA-62BBBBB01670.24 BB01
1555dnm_J_DA-62_DC-61A-BAB03680.27 AB03
1565dnm_J_DC-61_DC-60BBBBB00830.28 BB00
1575dnm_J_DC-60_DT-59miBBB10760.33 BB10
1585dnm_J_DT-59_DG-58NANNANT00.36 BB04
1595dnm_J_DG-58_DC-57BBwBB17220.41 BB17
1605dnm_J_DC-57_DA-56NANNANT00.46 BB07
1615dnm_J_DA-56_DG-55BBBBB00390.30 BB00
1625dnm_J_DG-55_DA-54B-ABA08590.30 BA08
1635dnm_J_DA-54_DT-53A-BAB01460.28 AB01
1645dnm_J_DT-53_DA-52BBBBB00810.21 BB00
1655dnm_J_DA-52_DC-51BBBBB00110.35 BB00
1665dnm_J_DC-51_DT-50miBBB10510.42 BB10
1675dnm_J_DT-50_DA-49miBBB14560.34 BB14
1685dnm_J_DA-49_DC-48BBwBB17550.29 BB17
1695dnm_J_DC-48_DC-47NANNANT00.63 BB07
1705dnm_J_DC-47_DA-46NANNANT00.53 BB07
1715dnm_J_DA-46_DA-45miBBB10770.39 BB10
1725dnm_J_DA-45_DA-44NANNANT00.45 BB08
1735dnm_J_DA-44_DA-43BBBBB00190.48 BB00
1745dnm_J_DA-43_DG-42B12BB04720.19 BB04
1755dnm_J_DG-42_DT-41BBBBB00840.25 BB00
1765dnm_J_DT-41_DG-40NANNANT00.50 BB11
1775dnm_J_DG-40_DT-39BBBBB00200.51 BB00
1785dnm_J_DT-39_DA-38BBBBB00550.32 BB00
1795dnm_J_DA-38_DT-37BBBBB00520.46 BB00
1805dnm_J_DT-37_DT-36BBBBB00750.27 BB00
1815dnm_J_DT-36_DT-35BBBBB00870.16 BB00
1825dnm_J_DT-35_DG-34B12BB04650.25 BB04
1835dnm_J_DG-34_DG-33B12BB04700.41 BB04
1845dnm_J_DG-33_DA-32NANNANT00.47 BB07
1855dnm_J_DA-32_DA-31BBwBB17690.29 BB17
1865dnm_J_DA-31_DA-30A-BAB02460.30 AB02
1875dnm_J_DA-30_DC-29B-ABA05740.20 BA05
1885dnm_J_DC-29_DT-28A-BAB03710.24 AB03
1895dnm_J_DT-28_DG-27B12BB04610.41 BB04
1905dnm_J_DG-27_DC-26BBBBB00650.32 BB00
1915dnm_J_DC-26_DT-25BB2BB07760.37 BB07
1925dnm_J_DT-25_DC-24BBBBB00190.36 BB00
1935dnm_J_DC-24_DC-23BB2BB07180.29 BB07
1945dnm_J_DC-23_DA-22B12BB04660.19 BB04
1955dnm_J_DA-22_DT-21BBBBB00280.33 BB00
1965dnm_J_DT-21_DC-20NANNANT00.47 BA09
1975dnm_J_DC-20_DA-19NANNANT00.80 AA01
1985dnm_J_DA-19_DA-18NANNANT00.60 BB17
1995dnm_J_DA-18_DA-17BBBBB00140.42 BB00
2005dnm_J_DA-17_DA-16B12BB04590.32 BB04
2015dnm_J_DA-16_DG-15BBBBB00690.21 BB00
2025dnm_J_DG-15_DG-14BB2BB07610.37 BB07
2035dnm_J_DG-14_DC-13BBBBB00740.27 BB00
2045dnm_J_DC-13_DA-12BBBBB00790.21 BB00
2055dnm_J_DA-12_DT-11BBBBB00460.18 BB00
2065dnm_J_DT-11_DG-10BBBBB00820.28 BB00
2075dnm_J_DG-10_DT-9BBBBB00860.19 BB00
2085dnm_J_DT-9_DT-8BBBBB01180.24 BB01
2095dnm_J_DT-8_DC-7BBBBB00110.36 BB00
2105dnm_J_DC-7_DA-6BB2BB07530.30 BB07
2115dnm_J_DA-6_DG-5BBBBB00790.22 BB00
2125dnm_J_DG-5_DC-4BB2BB07490.24 BB07
2135dnm_J_DC-4_DT-3BBBBB00720.20 BB00
2145dnm_J_DT-3_DG-2BBBBB00540.26 BB00
2155dnm_J_DG-2_DA-1B12BB04470.15 BB04
2165dnm_J_DA-1_DT0BBBBB00570.23 BB00
2175dnm_J_DT0_DT1BBBBB01470.27 BB01
2185dnm_J_DT1_DC2B12BB04210.40 BB04
2195dnm_J_DC2_DA3B12BB04470.35 BB04
2205dnm_J_DA3_DG4miBBB10520.22 BB10
2215dnm_J_DG4_DC5BB2BB07110.34 BB07
2225dnm_J_DC5_DT6NANNANT00.37 AB02
2235dnm_J_DT6_DG7NANNANT00.96 OP24
2245dnm_J_DG7_DA8B12BB04380.34 BB04
2255dnm_J_DA8_DA9BBBBB01700.28 BB01
2265dnm_J_DA9_DC10B-ABA05650.20 BA05
2275dnm_J_DC10_DA11NANNANT00.66 BB17
2285dnm_J_DA11_DT12BBBBB00250.41 BB00
2295dnm_J_DT12_DG13BB2BB07170.42 BB07
2305dnm_J_DG13_DC14miBBB10700.42 BB10
2315dnm_J_DC14_DC15miBBB10540.45 BB10
2325dnm_J_DC15_DT16B12BB04160.26 BB04
2335dnm_J_DT16_DT17BBBBB00700.27 BB00
2345dnm_J_DT17_DT18BBBBB00840.16 BB00
2355dnm_J_DT18_DT19BBBBB00830.14 BB00
2365dnm_J_DT19_DG20BBBBB00790.24 BB00
2375dnm_J_DG20_DA21miBBB10490.41 BB10
2385dnm_J_DA21_DT22BBBBB00830.25 BB00
2395dnm_J_DT22_DG23BBwBB11780.32 BB11
2405dnm_J_DG23_DG24BBwBB17420.47 BB17
2415dnm_J_DG24_DA25BB2BB07860.29 BB07
2425dnm_J_DA25_DG26BBBBB00610.35 BB00
2435dnm_J_DG26_DC27NANNANT00.47 BB10
2445dnm_J_DC27_DA28B12BB04420.37 BB04
2455dnm_J_DA28_DG29B12BB04970.09 BB04
2465dnm_J_DG29_DT30BBBBB00830.24 BB00
2475dnm_J_DT30_DT31miBBB10450.25 BB10
2485dnm_J_DT31_DT32miBBB10760.28 BB10
2495dnm_J_DT32_DC33NANNANT00.53 BB04
2505dnm_J_DC33_DC34NANNANT00.35 BB07
2515dnm_J_DC34_DA35NANNANT00.39 BB07
2525dnm_J_DA35_DA36BBBBB00690.25 BB00
2535dnm_J_DA36_DA37B12BB04720.19 BB04
2545dnm_J_DA37_DT38BBBBB00840.24 BB00
2555dnm_J_DT38_DA39BBBBB00330.27 BB00
2565dnm_J_DA39_DC40miBBB10780.22 BB10
2575dnm_J_DC40_DA41miBBB14500.20 BB14
2585dnm_J_DA41_DC42BBwBB11760.31 BB11
2595dnm_J_DC42_DT43BBwBB17380.39 BB17
2605dnm_J_DT43_DT44BBBBB01190.51 BB01
2615dnm_J_DT44_DT45NANNANT00.44 BA08
2625dnm_J_DT45_DT46NANNANT00.43 BB10
2635dnm_J_DT46_DG47B-ABA17170.32 BA17
2645dnm_J_DG47_DG48NANNANT00.45 BB03
2655dnm_J_DG48_DT49BBwBB16450.66 BB16
2665dnm_J_DT49_DA50NANNANT00.69 BB07
2675dnm_J_DA50_DG51miBBB10630.34 BB10
2685dnm_J_DG51_DT52BBBBB00440.28 BB00
2695dnm_J_DT52_DA53BBBBB01130.51 BB01
2705dnm_J_DA53_DT54BBwBB17680.25 BB17
2715dnm_J_DT54_DC55NANNANT00.62 BB00
2725dnm_J_DC55_DT56BBwBB17730.28 BB17
2735dnm_J_DT56_DG57BB2BB07740.28 BB07
2745dnm_J_DG57_DC58BBBBB00190.26 BB00
2755dnm_J_DC58_DA59BB2BB07720.23 BB07
2765dnm_J_DA59_DG60miBBB10500.25 BB10
2775dnm_J_DG60_DG61B-ABA01230.33 BA01
2785dnm_J_DG61_DT62AAAAA00550.38 AA00
2795dnm_J_DT62_DG63A-BAB05580.33 AB05
2805dnm_J_DG63_DG64miBBB10870.17 BB10
2815dnm_J_DG64_DA65miBBB10270.54 BB10
2825dnm_J_DA65_DT66BBBBB01270.42 BB01
2835dnm_J_DT66_DA67NANNANT00.50 BB17
2845dnm_J_DA67_DT68A-BAB03680.34 AB03
2855dnm_J_DT68_DT69BBBBB00780.16 BB00
2865dnm_J_DT69_DG70BBBBB00820.21 BB00
2875dnm_J_DG70_DA71B12BB04770.15 BB04
2885dnm_J_DA71_DT72BBBBB00670.26 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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