DNATCO v4.1: results

Two divalent metal ions and conformational changes play roles in the hammerhead ribozyme cleavage reaction-G12A mutant in Mn2+

Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
01	5dh7_A_G1_G2	AAA	AA00	77	0.16	AA00
02	5dh7_A_G2_G3	AAA	AA00	81	0.17	AA00
03	5dh7_A_G3_U4	AAA	AA00	90	0.17	AA00
04	5dh7_A_U4_A5	AAA	AA00	90	0.10	AA00
05	5dh7_A_A5_C6	AAA	AA00	77	0.18	AA00
06	5dh7_A_C6_U7	AAA	AA00	94	0.13	AA00
07	5dh7_A_U7_U8	AAA	AA00	84	0.21	AA00
08	5dh7_A_U8_A9	ZZZ	ZZ01	94	0.14	ZZ01
09	5dh7_A_A9_A10	NAN	NANT	0	1.61	OP16
10	5dh7_A_A10_G11	OPN	OP11	55	0.63	OP11
11	5dh7_A_G11_C12	AAA	AA00	93	0.09	AA00
12	5dh7_A_C12_C13	AAA	AA08	87	0.16	AA08
13	5dh7_A_C13_C14	AAA	AA00	92	0.14	AA00
14	5dh7_A_C14_A15	AAA	AA00	93	0.14	AA00
15	5dh7_A_A15_C16	A-B	AB05	74	0.33	AB05
16	5dh7_A_C16_U17	NAN	NANT	0	0.64	BA17
17	5dh7_A_U17_G18	OPN	OP03	79	0.30	OP03
18	5dh7_A_G18_A19	AAA	AA08	89	0.21	AA08
19	5dh7_A_A19_U20	NAN	NANT	0	0.79	IC03
20	5dh7_A_U20_G21	ZZZ	ZZ02	25	0.50	ZZ02
21	5dh7_A_G21_A22	NAN	NANT	0	0.55	OP02
22	5dh7_A_A22_G23	AAA	AA00	76	0.28	AA00
23	5dh7_A_G23_U24	AAA	AA00	90	0.12	AA00
24	5dh7_A_U24_C25	AAA	AA00	83	0.12	AA00
25	5dh7_A_C25_G26	AAA	AA00	86	0.12	AA00
26	5dh7_A_G26_C27	AAA	AA00	82	0.13	AA00
27	5dh7_A_C27_U28	AAA	AA00	81	0.13	AA00
28	5dh7_A_U28_G29	AAA	AA08	81	0.24	AA08
29	5dh7_A_G29_G30	OPN	OP04	74	0.12	OP04
30	5dh7_A_G30_G31	AAA	AA08	84	0.29	AA08
31	5dh7_A_G31_A32	ICL	IC04	83	0.23	IC04
32	5dh7_A_A32_U33	NAN	NANT	0	0.84	OP25
33	5dh7_A_U33_G34	OPN	OP12	70	0.51	OP12
34	5dh7_A_G34_C35	AAA	AA00	86	0.14	AA00
35	5dh7_A_C35_G36	AAA	AA00	91	0.11	AA00
36	5dh7_A_G36_A37	AAA	AA00	86	0.12	AA00
37	5dh7_A_A37_C38	AAw	AA01	63	0.24	AA01
38	5dh7_A_C38_A39	NAN	NANT	0	0.82	AA08
39	5dh7_A_A39_A40	AAu	AA07	88	0.28	AA07
40	5dh7_A_A40_A41	AAA	AA08	87	0.17	AA08
41	5dh7_A_A41_A42	AAA	AA00	69	0.29	AA00
42	5dh7_A_A42_C43	AAA	AA00	80	0.13	AA00
43	5dh7_A_C43_G44	AAA	AA08	85	0.16	AA08
44	5dh7_A_G44_C45	AAA	AA00	88	0.10	AA00
45	5dh7_A_C45_C46	AAA	AA00	90	0.13	AA00
46	5dh7_A_C46_C47	AAA	AA00	82	0.17	AA00
47	5dh7_A_C47_A48	AAA	AA08	77	0.32	AA08
48	5dh7_B_G1_G2	AAA	AA00	90	0.12	AA00
49	5dh7_B_G2_G3	AAA	AA00	87	0.15	AA00
50	5dh7_B_G3_C4	AAA	AA00	95	0.10	AA00
51	5dh7_B_C4_G5	AAA	AA00	93	0.15	AA00
52	5dh7_B_G5_U6	AAA	AA00	90	0.13	AA00
53	5dh7_B_U6_DC7	A-B	AB05	67	0.39	AB05
54	5dh7_B_DC7_U8	NAN	NANT	0	1.38	OP06
55	5dh7_B_U8_G9	AAA	AA00	91	0.11	AA00
56	5dh7_B_G9_G10	AAA	AA00	86	0.17	AA00
57	5dh7_B_G10_G11	AAA	AA00	87	0.12	AA00
58	5dh7_B_G11_C12	AAA	AA00	92	0.16	AA00
59	5dh7_B_C12_A13	NAN	NANT	0	0.97	IC03
60	5dh7_B_A13_G14	NAN	NANT	0	1.07	OP16
61	5dh7_B_G14_U15	AAA	AA00	72	0.18	AA00
62	5dh7_B_U15_A16	AAA	AA00	90	0.10	AA00
63	5dh7_B_A16_C17	AAA	AA00	94	0.10	AA00
64	5dh7_B_C17_C18	AAA	AA00	85	0.15	AA00
65	5dh7_B_C18_C19	AAA	AA00	88	0.17	AA00
66	5dh7_B_C19_A20	AAA	AA00	87	0.14	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 66 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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