Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Crystal structure of TET2-5hmC complex
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5deu_B_DA1_DC2 | BBw | BB16 | 24 | 0.37 |
| 02 | 5deu_B_DC2_DC3 | B-A | BA08 | 65 | 0.32 |
| 03 | 5deu_B_DC3_DA4 | BBB | BB01 | 18 | 0.43 |
| 04 | 5deu_B_DA4_DC5 | NAN | NANT | 0 | 0.59 |
| 05 | 5deu_B_DC5_5HC6 | NAN | NANT | 0 | 1.58 |
| 06 | 5deu_B_5HC6_DG7 | NAN | NANT | 0 | 1.94 |
| 07 | 5deu_B_DG7_DG8 | BBB | BB00 | 76 | 0.37 |
| 08 | 5deu_B_DG8_DT9 | BBB | BB00 | 86 | 0.28 |
| 09 | 5deu_B_DT9_DG10 | BBB | BB00 | 75 | 0.21 |
| 10 | 5deu_B_DG10_DG11 | BBB | BB00 | 75 | 0.22 |
| 11 | 5deu_B_DG11_DT12 | BBw | BB02 | 18 | 0.45 |
| 12 | 5deu_C_DC2_DC3 | AAA | AA00 | 50 | 0.40 |
| 13 | 5deu_C_DC3_DA4 | A-B | AB01 | 65 | 0.12 |
| 14 | 5deu_C_DA4_DC5 | B-A | BA01 | 64 | 0.24 |
| 15 | 5deu_C_DC5_5HC6 | NAN | NANT | 0 | 0.56 |
| 16 | 5deu_C_5HC6_DG7 | NAN | NANT | 0 | 0.52 |
| 17 | 5deu_C_DG7_DG8 | NAN | NANT | 0 | 0.70 |
| 18 | 5deu_C_DG8_DT9 | BBw | BB03 | 50 | 0.31 |
| 19 | 5deu_C_DT9_DG10 | BB2 | BB07 | 58 | 0.35 |
| 20 | 5deu_C_DG10_DG11 | BBB | BB00 | 73 | 0.19 |
| 21 | 5deu_C_DG11_DT12 | B-A | BA05 | 64 | 0.20 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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