DNATCO v4.1: results

Structural and Dynamic Basis for Low Affinity-High Selectivity Binding of L-glutamine by the Gln-riboswitch

Results of the assignment of 112 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	5ddo_A_C1_G2	AAA	AA08	83	0.20	AA08
002	5ddo_A_G2_U3	AAA	AA08	83	0.24	AA08
003	5ddo_A_U3_U4	AAA	AA00	63	0.32	AA00
004	5ddo_A_U4_G5	AAw	AA01	75	0.20	AA01
005	5ddo_A_G5_G6	AAw	AA11	22	0.45	AA11
006	5ddo_A_G6_C7	AAA	AA08	7	0.48	AA08
007	5ddo_A_C7_C8	AAA	AA00	31	0.29	AA00
008	5ddo_A_C8_C9	AAA	AA00	77	0.14	AA00
009	5ddo_A_C9_A10	AAA	AA00	69	0.18	AA00
010	5ddo_A_A10_G11	AAA	AA08	65	0.23	AA08
011	5ddo_A_G11_G12	AAA	AA00	85	0.27	AA00
012	5ddo_A_G12_A13	OPN	OP03	32	0.29	OP03
013	5ddo_A_A13_A14	AAw	AA06	64	0.42	AA06
014	5ddo_A_A14_A15	AAw	AA11	30	0.40	AA11
015	5ddo_A_A15_C16	AAA	AA08	8	0.73	AA08
016	5ddo_A_C16_U17	AAA	AA00	81	0.19	AA00
017	5ddo_A_U17_G18	AAA	AA00	72	0.18	AA00
018	5ddo_A_G18_G19	AAA	AA00	70	0.21	AA00
019	5ddo_A_G19_G20	AAA	AA00	72	0.14	AA00
020	5ddo_A_G20_U21	AAA	AA04	89	0.14	AA04
021	5ddo_A_A25_G26	NAN	NANT	0	0.38	OP23
022	5ddo_A_G26_U27	NAN	NANT	0	0.36	OP15
023	5ddo_A_U27_A28	NAN	NANT	0	0.65	AB02
024	5ddo_A_A28_A29	AAA	AA08	43	0.50	AA08
025	5ddo_A_A29_G30	AAA	AA00	77	0.20	AA00
026	5ddo_A_G30_G31	AAA	AA00	93	0.17	AA00
027	5ddo_A_G31_U32	AAA	AA00	91	0.18	AA00
028	5ddo_A_U32_C33	AAA	AA00	30	0.30	AA00
029	5ddo_A_C33_C34	AAA	AA04	70	0.27	AA04
030	5ddo_A_C34_A35	AAA	AA00	57	0.27	AA00
031	5ddo_A_A35_U36	AAA	AA08	74	0.18	AA08
032	5ddo_A_U36_U37	NAN	NANT	0	0.49	IC01
033	5ddo_A_U37_G38	NAN	NANT	0	1.80	ZZS2
034	5ddo_A_G38_C39	NAN	NANT	0	1.12	OPS1
035	5ddo_A_C39_A40	NAN	NANT	0	0.66	OP15
036	5ddo_A_A40_C41	AAA	AA08	82	0.19	AA08
037	5ddo_A_C41_U42	NAN	NANT	0	1.07	OP30
038	5ddo_A_U42_C43	AAA	AA08	63	0.49	AA08
039	5ddo_A_C43_C44	AAA	AA08	73	0.36	AA08
040	5ddo_A_C44_G45	NAN	NANT	0	1.51	OP17
041	5ddo_A_G45_G46	AAA	AA00	68	0.17	AA00
042	5ddo_A_G46_G47	AAA	AA00	69	0.24	AA00
043	5ddo_A_G47_C48	AAA	AA08	77	0.19	AA08
044	5ddo_A_C48_C49	NAN	NANT	0	0.33	AB04
045	5ddo_A_C49_U50	NAN	NANT	0	0.53	BB03
046	5ddo_A_U50_G51	AAA	AA08	59	0.47	AA08
047	5ddo_A_G51_A52	NAN	NANT	0	0.37	OP08
048	5ddo_A_A52_A53	AAA	AA08	15	0.37	AA08
049	5ddo_A_A53_G54	AAw	AA05	66	0.24	AA05
050	5ddo_A_G54_C55	NAN	NANT	0	1.72	OP31
051	5ddo_A_C55_A56	AAA	AA00	68	0.15	AA00
052	5ddo_A_A56_A57	AAA	AA00	65	0.14	AA00
053	5ddo_A_A57_C58	AAA	AA08	87	0.22	AA08
054	5ddo_A_C58_G59	AAA	AA00	84	0.12	AA00
055	5ddo_A_G59_C60	AAA	AA00	82	0.17	AA00
056	5ddo_A_C60_U61	AAw	AA06	38	0.44	AA06
057	5ddo_B_C1_G2	NAN	NANT	0	0.62	BA08
058	5ddo_B_G2_U3	AAA	AA00	11	0.42	AA00
059	5ddo_B_U3_U4	AAw	AA01	70	0.22	AA01
060	5ddo_B_U4_G5	NAN	NANT	0	0.47	AA03
061	5ddo_B_G5_G6	AAw	AA01	37	0.30	AA01
062	5ddo_B_G6_C7	AAA	AA03	50	0.36	AA03
063	5ddo_B_C7_C8	AAw	AA06	37	0.23	AA06
064	5ddo_B_C8_C9	AAA	AA03	51	0.26	AA03
065	5ddo_B_C9_A10	AAA	AA00	76	0.21	AA00
066	5ddo_B_A10_G11	AAA	AA08	74	0.28	AA08
067	5ddo_B_G11_G12	AAA	AA00	72	0.29	AA00
068	5ddo_B_G12_A13	OPN	OP04	58	0.27	OP04
069	5ddo_B_A13_A14	AAA	AA04	72	0.37	AA04
070	5ddo_B_A14_A15	NAN	NANT	0	0.39	AB2S
071	5ddo_B_A15_C16	SYN	AAS1	16	0.68	AAS1
072	5ddo_B_C16_U17	AAw	AA01	52	0.44	AA01
073	5ddo_B_U17_G18	NAN	NANT	0	0.65	AA11
074	5ddo_B_G18_G19	NAN	NANT	0	1.20	OP24
075	5ddo_B_G19_G20	AAA	AA08	54	0.26	AA08
076	5ddo_B_G20_U21	AAA	AA04	31	0.37	AA04
077	5ddo_B_A25_G26	NAN	NANT	0	1.83	OP17
078	5ddo_B_G26_U27	NAN	NANT	0	0.90	OP02
079	5ddo_B_U27_A28	NAN	NANT	0	0.72	AB02
080	5ddo_B_A28_A29	AAA	AA08	71	0.38	AA08
081	5ddo_B_A29_G30	AAA	AA08	61	0.29	AA08
082	5ddo_B_G30_G31	AAA	AA00	38	0.26	AA00
083	5ddo_B_G31_U32	AAA	AA04	88	0.14	AA04
084	5ddo_B_U32_C33	NAN	NANT	0	0.19	AA03
085	5ddo_B_C33_C34	AAA	AA00	78	0.26	AA00
086	5ddo_B_C34_A35	AAA	AA00	64	0.26	AA00
087	5ddo_B_A35_U36	AAA	AA00	44	0.23	AA00
088	5ddo_B_U36_U37	NAN	NANT	0	0.46	IC01
089	5ddo_B_U37_G38	NAN	NANT	0	1.81	ZZS2
090	5ddo_B_G38_C39	NAN	NANT	0	1.23	OP30
091	5ddo_B_C39_A40	NAN	NANT	0	0.52	OP15
092	5ddo_B_A40_C41	AAA	AA00	67	0.26	AA00
093	5ddo_B_C41_U42	NAN	NANT	0	1.06	OP21
094	5ddo_B_U42_C43	NAN	NANT	0	1.22	OP15
095	5ddo_B_C43_C44	NAN	NANT	0	0.78	AA07
096	5ddo_B_C44_G45	NAN	NANT	0	1.41	OP17
097	5ddo_B_G45_G46	AAA	AA08	70	0.20	AA08
098	5ddo_B_G46_G47	AAA	AA04	82	0.24	AA04
099	5ddo_B_G47_C48	AAA	AA08	54	0.25	AA08
100	5ddo_B_C48_C49	AAA	AA00	49	0.28	AA00
101	5ddo_B_C49_U50	AAA	AA00	74	0.27	AA00
102	5ddo_B_U50_G51	AAA	AA04	59	0.29	AA04
103	5ddo_B_G51_A52	NAN	NANT	0	1.36	AA11
104	5ddo_B_A52_A53	AAA	AA08	87	0.24	AA08
105	5ddo_B_A53_G54	AAw	AA11	50	0.51	AA11
106	5ddo_B_G54_C55	NAN	NANT	0	0.61	OP01
107	5ddo_B_C55_A56	AAA	AA08	59	0.41	AA08
108	5ddo_B_A56_A57	NAN	NANT	0	0.53	AA03
109	5ddo_B_A57_C58	NAN	NANT	0	0.60	BB02
110	5ddo_B_C58_G59	BBB	BB00	35	0.54	BB00
111	5ddo_B_G59_C60	BBB	BB00	36	0.59	BB00
112	5ddo_B_C60_U61	NAN	NANT	0	0.66	AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 112 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Definitions

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