Home or other PDB ID
 
 
 
 
 
 
 
 
 
Selection mode
 
 
 
 
 
 
Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Nucleosome containing methylated Sat2L DNA

Results of the assignment of 288 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015cpk_I_DA1_DT2NANNANT00.90 AA01
0025cpk_I_DT2_DC3BBBBB01190.23 BB01
0035cpk_I_DC3_DA4B12BB04800.17 BB04
0045cpk_I_DA4_DT5BBBBB00760.23 BB00
0055cpk_I_DT5_DG6BBBBB00270.36 BB00
0065cpk_I_DG6_DG7B12BB04560.30 BB04
0075cpk_I_DG7_DA8B12BB04330.24 BB04
0085cpk_I_DA8_DA9miBBB10630.27 BB10
0095cpk_I_DA9_DT10BBBBB00890.22 BB00
0105cpk_I_DT10_DC11NANNANT00.55 BA01
0115cpk_I_DC11_DA12NANNANT00.78 AA11
0125cpk_I_DA12_DT13NANNANT00.46 BB03
0135cpk_I_DT13_DT14NANNANT00.71 BB00
0145cpk_I_DT14_DG15NANNANT00.81 BB10
0155cpk_I_DG15_DA16BB2BB07250.33 BB07
0165cpk_I_DA16_DA17BBBBB00620.30 BB00
0175cpk_I_DA17_DT18miBBB10660.33 BB10
0185cpk_I_DT18_DG19B-ABA08450.55 BA08
0195cpk_I_DG19_DG20NANNANT00.45 AB01
0205cpk_I_DG20_DA21BBBBB00330.52 BB00
0215cpk_I_DA21_DA22miBBB10820.16 BB10
0225cpk_I_DA22_DA23BBwBB17800.28 BB17
0235cpk_I_DA23_DT24BBBBB00210.25 BB00
0245cpk_I_DT24_DG25NANNANT00.24 BB07
0255cpk_I_DG25_DA26miBBB10600.34 BB10
0265cpk_I_DA26_DA27BB2BB07360.34 BB07
0275cpk_I_DA27_DT28NANNANT00.28 BB07
0285cpk_I_DT28_DG29BB2BB07650.35 BB07
0295cpk_I_DG29_DG30miBBB15630.35 BB15
0305cpk_I_DG30_DA31BBBBB00320.19 BB00
0315cpk_I_DA31_DA32B12BB04130.44 BB04
0325cpk_I_DA32_DT33BBBBB00600.30 BB00
0335cpk_I_DT33_DC34NANNANT00.48 BB03
0345cpk_I_DC34_DA35NANNANT00.98 BB12
0355cpk_I_DA35_DT36NANNANT00.71 BB00
0365cpk_I_DT36_DT37NANNANT00.32 AB03
0375cpk_I_DT37_DG38BB2BB07810.26 BB07
0385cpk_I_DG38_DG39BBBBB00810.23 BB00
0395cpk_I_DG39_DT40BBBBB00530.28 BB00
0405cpk_I_DT40_DT41BBBBB00170.23 BB00
0415cpk_I_DT41_DG42BBBBB00400.19 BB00
0425cpk_I_DG42_DG43NANNANT00.38 BA08
0435cpk_I_DG43_DA44BBBBB00420.39 BB00
0445cpk_I_DA44_DC45B-ABA01370.32 BA01
0455cpk_I_DC45_DT46NANNANT00.80 BB16
0465cpk_I_DT46_DC47NANNANT00.39 BB10
0475cpk_I_DC47_DA48BBBBB00140.37 BB00
0485cpk_I_DA48_DA49B12BB04670.22 BB04
0495cpk_I_DA49_DA50miBBB12490.53 BB12
0505cpk_I_DA50_DT51NANNANT00.67 BB15
0515cpk_I_DT51_DG52miBBB10780.19 BB10
0525cpk_I_DG52_DG53miBBB10830.26 BB10
0535cpk_I_DG53_DA54miBBB10620.51 BB10
0545cpk_I_DA54_DA55NANNANT00.74 BB02
0555cpk_I_DA55_DT56NANNANT00.49 BA05
0565cpk_I_DT56_DT57A-BAB01190.37 AB01
0575cpk_I_DT57_DT58B-ABA05280.38 BA05
0585cpk_I_DT58_DT59NANNANT00.59 AA02
0595cpk_I_DT59_5CM60AAAAA02480.41 AA02
0605cpk_I_5CM60_DG61BBBBB01460.28 BB01
0615cpk_I_DG61_DA62B12BB04120.50 BB04
0625cpk_I_DA62_DA63miBBB10570.24 BB10
0635cpk_I_DA63_DC64B12BB04140.20 BB04
0645cpk_I_DC64_DA65miBBB10370.38 BB10
0655cpk_I_DA65_DG66BBBBB00200.28 BB00
0665cpk_I_DG66_DG67NANNANT00.55 BB07
0675cpk_I_DG67_DC68BBBBB00100.43 BB00
0685cpk_I_DC68_DT69B-ABA17540.31 BA17
0695cpk_I_DT69_DC70A-BAB03290.37 AB03
0705cpk_I_DC70_DA71miBBB10560.33 BB10
0715cpk_I_DA71_DA72BBBBB00630.25 BB00
0725cpk_I_DA72_DA73BBBBB00830.13 BB00
0735cpk_I_DA73_DT74NANNANT00.30 BB10
0745cpk_I_DT74_DG75A-BAB01850.14 AB01
0755cpk_I_DG75_DG76NANNANT00.48 BB00
0765cpk_I_DG76_DA77NANNANT00.43 BB07
0775cpk_I_DA77_DA78BBBBB00380.18 BB00
0785cpk_I_DA78_DT79BB2BB07100.48 BB07
0795cpk_I_DT79_DC80B12BB04590.20 BB04
0805cpk_I_DC80_DT81B12BB04850.24 BB04
0815cpk_I_DT81_DT82BBBBB00930.12 BB00
0825cpk_I_DT82_5CM83B-ABA05810.18 BA05
0835cpk_I_5CM83_DG84A-BAB03630.32 AB03
0845cpk_I_DG84_DA85NANNANT00.59 BB02
0855cpk_I_DA85_DA86BB2BB07160.37 BB07
0865cpk_I_DA86_DT87miBBB15690.28 BB15
0875cpk_I_DT87_DG88BB2BB07640.26 BB07
0885cpk_I_DG88_DG89BBBBB00770.17 BB00
0895cpk_I_DG89_DA90BBBBB00500.30 BB00
0905cpk_I_DA90_DT91miBBB15330.32 BB15
0915cpk_I_DT91_DT92miBBB15840.21 BB15
0925cpk_I_DT92_5CM93NANNANT00.40 BB10
0935cpk_I_5CM93_DG94miBBB14600.24 BB14
0945cpk_I_DG94_DA95BBBBB00490.30 BB00
0955cpk_I_DA95_DA96miBBB10820.38 BB10
0965cpk_I_DA96_DT97miBBB15790.30 BB15
0975cpk_I_DT97_DG98NANNANT00.37 BB10
0985cpk_I_DG98_DT99NANNANT00.46 BB07
0995cpk_I_DT99_DA100NANNANT00.59 BB10
1005cpk_I_DA100_DA101B12BB04660.14 BB04
1015cpk_I_DA101_DT102B12BB04110.34 BB04
1025cpk_I_DT102_DC103B12BB04830.20 BB04
1035cpk_I_DC103_DA104BBBBB00840.15 BB00
1045cpk_I_DA104_DT105B12BB04170.41 BB04
1055cpk_I_DT105_DT106B-ABA08790.24 BA08
1065cpk_I_DT106_DT107NANNANT00.75 IC04
1075cpk_I_DT107_DT108B12BB04320.47 BB04
1085cpk_I_DT108_5CM109NANNANT00.57 BB13
1095cpk_I_5CM109_DG110A-BAB01100.32 AB01
1105cpk_I_DG110_DA111miBBB10570.35 BB10
1115cpk_I_DA111_DA112B12BB04540.24 BB04
1125cpk_I_DA112_DT113BBBBB0090.32 BB00
1135cpk_I_DT113_DG114NANNANT00.48 BB04
1145cpk_I_DG114_DG115NANNANT00.23 BB07
1155cpk_I_DG115_DA116BBBBB00640.37 BB00
1165cpk_I_DA116_DT117BBBBB00510.42 BB00
1175cpk_I_DT117_DT118BBBBB00380.43 BB00
1185cpk_I_DT118_5CM119NANNANT00.41 BA08
1195cpk_I_5CM119_DG120A-BAB02330.47 AB02
1205cpk_I_DG120_DA121BBBBB00710.38 BB00
1215cpk_I_DA121_DA122BBBBB00600.41 BB00
1225cpk_I_DA122_DT123BBBBB00720.20 BB00
1235cpk_I_DT123_DG124B-ABA08410.51 BA08
1245cpk_I_DG124_DG125NANNANT00.25 AB03
1255cpk_I_DG125_DA126B12BB04680.27 BB04
1265cpk_I_DA126_DA127NANNANT00.61 BB02
1275cpk_I_DA127_DT128NANNANT00.48 AB02
1285cpk_I_DT128_DC129NANNANT00.54 BA05
1295cpk_I_DC129_DT130A-BAB01590.37 AB01
1305cpk_I_DT130_DT131BBBBB00800.15 BB00
1315cpk_I_DT131_5CM132B12BB04240.37 BB04
1325cpk_I_5CM132_DG133BBBBB00760.26 BB00
1335cpk_I_DG133_DA134NANNANT00.38 BA10
1345cpk_I_DA134_DA135NANNANT00.59 BB16
1355cpk_I_DA135_DT136NANNANT00.72 BA08
1365cpk_I_DT136_DG137NANNANT00.45 BB03
1375cpk_I_DG137_DG138BBBBB00270.44 BB00
1385cpk_I_DG138_DA139B12BB04170.33 BB04
1395cpk_I_DA139_DA140NANNANT00.36 BB02
1405cpk_I_DA140_DA141B12BB05330.33 BB05
1415cpk_I_DA141_DT142BBBBB00330.57 BB00
1425cpk_I_DT142_DG143BBBBB00530.43 BB00
1435cpk_I_DG143_DA144BBBBB01870.20 BB01
1445cpk_I_DA144_DT145miBBB13290.40 BB13
1455cpk_J_DA1_DT2NANNANT00.84 BB02
1465cpk_J_DT2_DC3NANNANT00.70 BB03
1475cpk_J_DC3_DA4BBBBB00130.46 BB00
1485cpk_J_DA4_DT5NANNANT00.52 BB11
1495cpk_J_DT5_DT6NANNANT00.58 BA16
1505cpk_J_DT6_DT7NANNANT00.62 AA00
1515cpk_J_DT7_DC8A-BAB01240.20 AB01
1525cpk_J_DC8_DC9BBBBB00610.23 BB00
1535cpk_J_DC9_DA10BBBBB00710.24 BB00
1545cpk_J_DA10_DT11NANNANT00.21 BB10
1555cpk_J_DT11_DT12NANNANT00.25 AB03
1565cpk_J_DT12_5CM13NANNANT00.59 BA05
1575cpk_J_5CM13_DG14A-BAB01230.44 AB01
1585cpk_J_DG14_DA15BBBBB00120.44 BB00
1595cpk_J_DA15_DA16BB2BB07200.34 BB07
1605cpk_J_DA16_DG17BBBBB00330.35 BB00
1615cpk_J_DG17_DA18BB2BB07840.22 BB07
1625cpk_J_DA18_DT19NANNANT00.53 BB15
1635cpk_J_DT19_DT20BBBBB00180.46 BB00
1645cpk_J_DT20_DC21BB2BB0790.30 BB07
1655cpk_J_DC21_DC22BBBBB00720.20 BB00
1665cpk_J_DC22_DA23B12BB04670.33 BB04
1675cpk_J_DA23_DT24BBBBB00530.24 BB00
1685cpk_J_DT24_DT25BBBBB00600.22 BB00
1695cpk_J_DT25_5CM26BB2BB07400.39 BB07
1705cpk_J_5CM26_DG27NANNANT00.43 BB07
1715cpk_J_DG27_DA28B12BB04460.16 BB04
1725cpk_J_DA28_DA29B12BB04410.31 BB04
1735cpk_J_DA29_DT30BBwBB02530.34 BB02
1745cpk_J_DT30_DC31miBBB15650.28 BB15
1755cpk_J_DC31_DC32B12BB04100.57 BB04
1765cpk_J_DC32_DA33miBBB10490.37 BB10
1775cpk_J_DA33_DT34NANNANT00.54 BA08
1785cpk_J_DT34_DT35A-BAB01470.41 AB01
1795cpk_J_DT35_5CM36NANNANT00.41 BB17
1805cpk_J_5CM36_DG37NANNANT00.81 BB08
1815cpk_J_DG37_DA38B12BB04260.41 BB04
1825cpk_J_DA38_DA39miBBB10640.35 BB10
1835cpk_J_DA39_DA40BBBBB00510.21 BB00
1845cpk_J_DA40_DA41BBBBB00760.17 BB00
1855cpk_J_DA41_DT42B12BB04450.21 BB04
1865cpk_J_DT42_DG43miBBB10650.23 BB10
1875cpk_J_DG43_DA44miBBB10670.47 BB10
1885cpk_J_DA44_DT45BBBBB00570.25 BB00
1895cpk_J_DT45_DT46miBBB13730.20 BB13
1905cpk_J_DT46_DA47BBwBB16380.29 BB16
1915cpk_J_DA47_DC48NANNANT00.33 BB07
1925cpk_J_DC48_DA49BB2BB07380.23 BB07
1935cpk_J_DA49_DT50miBBB15470.25 BB15
1945cpk_J_DT50_DT51miBBB15550.20 BB15
1955cpk_J_DT51_5CM52NANNANT00.38 BA08
1965cpk_J_5CM52_DG53A-BAB03450.32 AB03
1975cpk_J_DG53_DA54miBBB10680.27 BB10
1985cpk_J_DA54_DA55A-BAB03660.26 AB03
1995cpk_J_DA55_DT56BBBBB00800.21 BB00
2005cpk_J_DT56_DC57B12BB04360.34 BB04
2015cpk_J_DC57_DC58miBBB10520.28 BB10
2025cpk_J_DC58_DA59NANNANT00.46 BB00
2035cpk_J_DA59_DT60BBBBB00610.34 BB00
2045cpk_J_DT60_DT61miBBB15430.44 BB15
2055cpk_J_DT61_5CM62BB2BB07170.27 BB07
2065cpk_J_5CM62_DG63BBBBB00610.31 BB00
2075cpk_J_DG63_DA64B12BB04250.16 BB04
2085cpk_J_DA64_DA65BBBBB00470.55 BB00
2095cpk_J_DA65_DG66BBBBB00740.31 BB00
2105cpk_J_DG66_DA67BB2BB07150.32 BB07
2115cpk_J_DA67_DT68BBBBB00820.20 BB00
2125cpk_J_DT68_DT69BB2BB07460.19 BB07
2135cpk_J_DT69_DC70BBBBB00750.28 BB00
2145cpk_J_DC70_DC71miBBB15290.30 BB15
2155cpk_J_DC71_DA72B12BB04530.23 BB04
2165cpk_J_DA72_DT73BBBBB00490.32 BB00
2175cpk_J_DT73_DT74B12BB04380.29 BB04
2185cpk_J_DT74_DT75miBBB10380.41 BB10
2195cpk_J_DT75_DG76miBBB10510.50 BB10
2205cpk_J_DG76_DA77B12BB04470.31 BB04
2215cpk_J_DA77_DG78miBBB10420.24 BB10
2225cpk_J_DG78_DC79NANNANT00.48 BB07
2235cpk_J_DC79_DC80NANNANT00.50 BB08
2245cpk_J_DC80_DT81A-BAB0180.41 AB01
2255cpk_J_DT81_DG82BBBBB00120.34 BB00
2265cpk_J_DG82_DT83NANNANT00.36 BA08
2275cpk_J_DT83_DT84NANNANT00.53 BB13
2285cpk_J_DT84_5CM85NANNANT00.77 BB17
2295cpk_J_5CM85_DG86NANNANT00.70 BB01
2305cpk_J_DG86_DA87BBBBB00240.38 BB00
2315cpk_J_DA87_DA88NANNANT00.51 BA17
2325cpk_J_DA88_DA89B12BB04460.46 BB04
2335cpk_J_DA89_DA90BB2BB07740.14 BB07
2345cpk_J_DA90_DT91BBBBB00790.19 BB00
2355cpk_J_DT91_DT92B-ABA0160.31 BA01
2365cpk_J_DT92_DC93B-ABA05260.30 BA05
2375cpk_J_DC93_DC94A-BAB01170.46 AB01
2385cpk_J_DC94_DA95NANNANT00.28 BB10
2395cpk_J_DA95_DT96AAAAA02230.51 AA02
2405cpk_J_DT96_DT97A-BAB01270.33 AB01
2415cpk_J_DT97_DT98BBBBB00240.43 BB00
2425cpk_J_DT98_DG99NANNANT00.52 BB07
2435cpk_J_DG99_DA100NANNANT00.51 BB00
2445cpk_J_DA100_DG101NANNANT00.32 BB10
2455cpk_J_DG101_DT102BBBBB01500.31 BB01
2465cpk_J_DT102_DC103miBBB10310.25 BB10
2475cpk_J_DC103_DC104B12BB05590.35 BB05
2485cpk_J_DC104_DA105NANNANT00.41 BB10
2495cpk_J_DA105_DA106miBBB10520.48 BB10
2505cpk_J_DA106_DC107NANNANT00.32 BB01
2515cpk_J_DC107_DC108A-BAB03280.47 AB03
2525cpk_J_DC108_DA109BBBBB00880.16 BB00
2535cpk_J_DA109_DA110miBBB10710.38 BB10
2545cpk_J_DA110_DT111BB2BB07550.35 BB07
2555cpk_J_DT111_DG112NANNANT00.48 BA05
2565cpk_J_DG112_DA113NANNANT00.47 BB15
2575cpk_J_DA113_DT114BBBBB00430.19 BB00
2585cpk_J_DT114_DT115miBBB10860.31 BB10
2595cpk_J_DT115_DC116BBBBB00410.27 BB00
2605cpk_J_DC116_DC117BBBBB00580.20 BB00
2615cpk_J_DC117_DT118NANNANT00.33 BB07
2625cpk_J_DT118_DC119NANNANT00.44 BB07
2635cpk_J_DC119_DT120NANNANT00.51 BB00
2645cpk_J_DT120_DC121miBBB10570.33 BB10
2655cpk_J_DC121_DA122BBBBB00580.42 BB00
2665cpk_J_DA122_DT123miBBB15590.26 BB15
2675cpk_J_DT123_DT124B-ABA01460.32 BA01
2685cpk_J_DT124_DT125NANNANT00.39 AB03
2695cpk_J_DT125_DC126BBBBB00410.29 BB00
2705cpk_J_DC126_DC127BBBBB00870.15 BB00
2715cpk_J_DC127_DA128BB2BB07230.21 BB07
2725cpk_J_DA128_DT129BBBBB00580.20 BB00
2735cpk_J_DT129_DT130BB2BB07520.30 BB07
2745cpk_J_DT130_DC131BBBBB00510.25 BB00
2755cpk_J_DC131_DA132BBBBB00590.17 BB00
2765cpk_J_DA132_DA133BB2BB07220.40 BB07
2775cpk_J_DA133_DT134BBBBB00790.16 BB00
2785cpk_J_DT134_DG135miBBB10860.19 BB10
2795cpk_J_DG135_DA136B12BB04440.35 BB04
2805cpk_J_DA136_DT137NANNANT00.35 BB10
2815cpk_J_DT137_DT138A-BAB01280.41 AB01
2825cpk_J_DT138_DC139BBBBB00320.37 BB00
2835cpk_J_DC139_DC140BBBBB00790.21 BB00
2845cpk_J_DC140_DA141B12BB04850.20 BB04
2855cpk_J_DA141_DT142BBBBB00710.22 BB00
2865cpk_J_DT142_DG143BBBBB00770.17 BB00
2875cpk_J_DG143_DA144B12BB04780.18 BB04
2885cpk_J_DA144_DT145BBBBB00840.26 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show




Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N