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Conformers: ABBIImiBZICOPNSYNN
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Nucleosome containing methylated Sat2R DNA

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015cpj_I_DA1_DT2NANNANT00.47 BB03
0025cpj_I_DT2_DC3NANNANT00.89 IC04
0035cpj_I_DC3_DC4BBBBB00300.41 BB00
0045cpj_I_DC4_DA5BBBBB00400.37 BB00
0055cpj_I_DA5_DA6BB2BB08590.37 BB08
0065cpj_I_DA6_DA7miBBB10320.34 BB10
0075cpj_I_DA7_DT8BBBBB00340.37 BB00
0085cpj_I_DT8_DG9NANNANT00.39 BB05
0095cpj_I_DG9_DG10BBBBB00190.74 BB00
0105cpj_I_DG10_DA11B-ABA17780.32 BA17
0115cpj_I_DA11_DT12NANNANT00.38 AA10
0125cpj_I_DT12_DT13NANNANT00.51 AA01
0135cpj_I_DT13_5CM14NANNANT00.59 BB03
0145cpj_I_5CM14_DG15A-BAB05190.40 AB05
0155cpj_I_DG15_DA16BBBBB00500.34 BB00
0165cpj_I_DA16_DA17NANNANT00.54 BB00
0175cpj_I_DA17_DT18BBBBB00770.16 BB00
0185cpj_I_DT18_DG19BBBBB00520.31 BB00
0195cpj_I_DG19_DG20B12BB04460.35 BB04
0205cpj_I_DG20_DA21NANNANT00.57 BB02
0215cpj_I_DA21_DA22BBBBB00280.31 BB00
0225cpj_I_DA22_DT23NANNANT00.29 BB15
0235cpj_I_DT23_DC24BBwBB02300.41 BB02
0245cpj_I_DC24_DA25NANNANT00.58 BA05
0255cpj_I_DA25_DT26NANNANT00.56 BA08
0265cpj_I_DT26_DT27NANNANT00.52 AA10
0275cpj_I_DT27_DG28BBwBB16360.57 BB16
0285cpj_I_DG28_DA29NANNANT00.45 BB08
0295cpj_I_DA29_DA30NANNANT00.39 BB15
0305cpj_I_DA30_DT31NANNANT00.39 BA08
0315cpj_I_DT31_DG32BBBBB00150.51 BB00
0325cpj_I_DG32_DG33NANNANT00.55 BB10
0335cpj_I_DG33_DA34miBBB13760.28 BB13
0345cpj_I_DA34_DA35NANNANT00.46 BB17
0355cpj_I_DA35_DA36BBBBB00690.22 BB00
0365cpj_I_DA36_DT37BBwBB02650.31 BB02
0375cpj_I_DT37_DG38miBBB10360.34 BB10
0385cpj_I_DG38_DA39BBBBB00210.39 BB00
0395cpj_I_DA39_DA40NANNANT00.83 BB02
0405cpj_I_DA40_DT41NANNANT00.58 BB10
0415cpj_I_DT41_DG42NANNANT00.61 AA01
0425cpj_I_DG42_DG43BBwBB02290.38 BB02
0435cpj_I_DG43_DA44NANNANT00.55 BB03
0445cpj_I_DA44_DA45miBBB13760.36 BB13
0455cpj_I_DA45_DT46NANNANT00.59 BA10
0465cpj_I_DT46_DC47NANNANT00.48 BB02
0475cpj_I_DC47_DA48BBBBB00510.40 BB00
0485cpj_I_DA48_DT49BBBBB00390.41 BB00
0495cpj_I_DT49_DT50B12BB04870.21 BB04
0505cpj_I_DT50_DG51BBBBB00540.37 BB00
0515cpj_I_DG51_DG52NANNANT00.78 BB02
0525cpj_I_DG52_DT53BBBBB00660.42 BB00
0535cpj_I_DT53_DT54BBBBB01320.23 BB01
0545cpj_I_DT54_DG55NANNANT00.55 BB13
0555cpj_I_DG55_DG56NANNANT00.73 BB03
0565cpj_I_DG56_DA57BBBBB00320.33 BB00
0575cpj_I_DA57_DC58NANNANT00.62 BB13
0585cpj_I_DC58_DT59BBBBB00620.48 BB00
0595cpj_I_DT59_DC60NANNANT00.39 BB02
0605cpj_I_DC60_DA61BBBBB00100.37 BB00
0615cpj_I_DA61_DA62BBwBB02650.22 BB02
0625cpj_I_DA62_DA63NANNANT00.45 BB10
0635cpj_I_DA63_DT64B12BB0470.42 BB04
0645cpj_I_DT64_DG65BBBBB00510.41 BB00
0655cpj_I_DG65_DG66B12BB04880.19 BB04
0665cpj_I_DG66_DA67BB2BB0790.31 BB07
0675cpj_I_DA67_DA68B12BB04150.28 BB04
0685cpj_I_DA68_DT69B-ABA17690.25 BA17
0695cpj_I_DT69_DT70BBBBB01410.22 BB01
0705cpj_I_DT70_DT71miBBB15650.28 BB15
0715cpj_I_DT71_DT72BBBBB00350.29 BB00
0725cpj_I_DT72_5CM73NANNANT00.48 BA08
0735cpj_I_5CM73_DG74NANNANT00.42 AB03
0745cpj_I_DG74_DA75BBBBB00650.36 BB00
0755cpj_I_DA75_DA76BBBBB00750.28 BB00
0765cpj_I_DA76_DC77BBBBB00190.30 BB00
0775cpj_I_DC77_DA78BBBBB00480.34 BB00
0785cpj_I_DA78_DG79miBBB10370.48 BB10
0795cpj_I_DG79_DG80BBBBB00590.32 BB00
0805cpj_I_DG80_DC81miBBB10410.48 BB10
0815cpj_I_DC81_DT82BBBBB00650.20 BB00
0825cpj_I_DT82_DC83BBBBB00550.18 BB00
0835cpj_I_DC83_DA84miBBB10340.27 BB10
0845cpj_I_DA84_DA85B12BB04400.29 BB04
0855cpj_I_DA85_DA86NANNANT00.47 BB05
0865cpj_I_DA86_DT87B-ABA05330.36 BA05
0875cpj_I_DT87_DG88A-BAB02200.49 AB02
0885cpj_I_DG88_DG89NANNANT00.33 BB17
0895cpj_I_DG89_DA90BB2BB07470.36 BB07
0905cpj_I_DA90_DA91miBBB10610.30 BB10
0915cpj_I_DA91_DT92BBBBB00620.17 BB00
0925cpj_I_DT92_DC93BBBBB00290.35 BB00
0935cpj_I_DC93_DT94miBBB10690.26 BB10
0945cpj_I_DT94_DT95B-ABA08390.50 BA08
0955cpj_I_DT95_5CM96NANNANT00.72 AA06
0965cpj_I_5CM96_DG97NANNANT00.76 AA07
0975cpj_I_DG97_DA98NANNANT00.56 BB10
0985cpj_I_DA98_DA99BB2BB07520.50 BB07
0995cpj_I_DA99_DT100B12BB04340.48 BB04
1005cpj_I_DT100_DG101BBwBB11550.36 BB11
1015cpj_I_DG101_DG102BBBBB00290.49 BB00
1025cpj_I_DG102_DA103B12BB04430.46 BB04
1035cpj_I_DA103_DT104BBBBB00460.35 BB00
1045cpj_I_DT104_DT105NANNANT00.51 BA13
1055cpj_I_DT105_5CM106AAwAA05240.34 AA05
1065cpj_I_5CM106_DG107NANNANT00.71 IC04
1075cpj_I_DG107_DA108NANNANT00.52 BB08
1085cpj_I_DA108_DA109BBBBB00440.28 BB00
1095cpj_I_DA109_DT110BBBBB00830.23 BB00
1105cpj_I_DT110_DG111BBBBB00660.31 BB00
1115cpj_I_DG111_DT112BBwBB02290.43 BB02
1125cpj_I_DT112_DA113miBBB15590.31 BB15
1135cpj_I_DA113_DA114miBBB13590.51 BB13
1145cpj_I_DA114_DT115BBBBB00360.59 BB00
1155cpj_I_DT115_DC116NANNANT00.45 BB02
1165cpj_I_DC116_DA117BBBBB00500.49 BB00
1175cpj_I_DA117_DT118B12BB04560.26 BB04
1185cpj_I_DT118_DT119BBBBB00500.33 BB00
1195cpj_I_DT119_DT120BB2BB07560.18 BB07
1205cpj_I_DT120_DT121B12BB04160.35 BB04
1215cpj_I_DT121_5CM122B-ABA08420.37 BA08
1225cpj_I_5CM122_DG123A-BAB03720.33 AB03
1235cpj_I_DG123_DA124NANNANT00.51 BB02
1245cpj_I_DA124_DA125B12BB05300.29 BB05
1255cpj_I_DA125_DT126BBBBB00300.41 BB00
1265cpj_I_DT126_DG127NANNANT00.60 BB03
1275cpj_I_DG127_DG128miBBB13320.64 BB13
1285cpj_I_DG128_DA129NANNANT00.58 BB05
1295cpj_I_DA129_DT130NANNANT00.43 BB16
1305cpj_I_DT130_DT131NANNANT00.59 BB11
1315cpj_I_DT131_5CM132B-ABA17390.35 BA17
1325cpj_I_5CM132_DG133NANNANT00.69 BB03
1335cpj_I_DG133_DA134NANNANT00.54 BB03
1345cpj_I_DA134_DA135NANNANT00.40 BB10
1355cpj_I_DA135_DT136miBBB12300.55 BB12
1365cpj_I_DT136_DG137NANNANT00.74 IC06
1375cpj_I_DG137_DG138BBBBB00700.27 BB00
1385cpj_I_DG138_DA139NANNANT00.56 BB11
1395cpj_I_DA139_DA140NANNANT00.65 BB15
1405cpj_I_DA140_DT141B-ABA0880.61 BA08
1415cpj_I_DT141_DC142A-BAB01410.32 AB01
1425cpj_I_DC142_DT143BBBBB00350.41 BB00
1435cpj_I_DT143_DG144BB2BB07230.55 BB07
1445cpj_I_DG144_DA145NANNANT00.41 BA05
1455cpj_I_DA145_DT146NANNANT00.71 BB08
1465cpj_J_DA1_DT2NANNANT00.83 BB03
1475cpj_J_DT2_DC3NANNANT00.74 BB08
1485cpj_J_DC3_DA4NANNANT00.81 BA05
1495cpj_J_DA4_DG5NANNANT00.54 AA02
1505cpj_J_DG5_DA6NANNANT00.33 BB03
1515cpj_J_DA6_DT7NANNANT00.62 BB08
1525cpj_J_DT7_DT8BBBBB00600.46 BB00
1535cpj_J_DT8_DC9NANNANT00.48 BB04
1545cpj_J_DC9_DC10miBBB10580.30 BB10
1555cpj_J_DC10_DA11B12BB05380.33 BB05
1565cpj_J_DA11_DT12NANNANT00.92 IC06
1575cpj_J_DT12_DT13NANNANT00.45 BB02
1585cpj_J_DT13_5CM14NANNANT00.61 BA10
1595cpj_J_5CM14_DG15NANNANT00.67 IC06
1605cpj_J_DG15_DA16BBwBB02190.31 BB02
1615cpj_J_DA16_DA17BBBBB00270.46 BB00
1625cpj_J_DA17_DT18miBBB10460.65 BB10
1635cpj_J_DT18_DC19NANNANT00.53 BB03
1645cpj_J_DC19_DC20B12BB04180.51 BB04
1655cpj_J_DC20_DA21B-ABA08130.36 BA08
1665cpj_J_DA21_DT22A-BAB01220.34 AB01
1675cpj_J_DT22_DT23B12BB0490.55 BB04
1685cpj_J_DT23_5CM24NANNANT00.56 BB17
1695cpj_J_5CM24_DG25NANNANT00.80 BB03
1705cpj_J_DG25_DA26BBBBB00230.49 BB00
1715cpj_J_DA26_DA27BBwBB11190.39 BB11
1725cpj_J_DA27_DA28BBBBB00280.42 BB00
1735cpj_J_DA28_DA29BBBBB00370.39 BB00
1745cpj_J_DA29_DT30BBBBB00760.22 BB00
1755cpj_J_DT30_DG31BBBBB0080.20 BB00
1765cpj_J_DG31_DA32NANNANT00.47 BB02
1775cpj_J_DA32_DT33NANNANT00.47 BB15
1785cpj_J_DT33_DT34BBwBB11670.40 BB11
1795cpj_J_DT34_DA35BBBBB00270.42 BB00
1805cpj_J_DA35_DC36BBwBB02420.52 BB02
1815cpj_J_DC36_DA37BBwBB03510.30 BB03
1825cpj_J_DA37_DT38A-BAB03490.35 AB03
1835cpj_J_DT38_DT39miBBB10720.30 BB10
1845cpj_J_DT39_5CM40NANNANT00.84 BA17
1855cpj_J_5CM40_DG41NANNANT00.92 BB10
1865cpj_J_DG41_DA42BBBBB00340.42 BB00
1875cpj_J_DA42_DA43NANNANT00.35 BB03
1885cpj_J_DA43_DT44NANNANT00.54 BB13
1895cpj_J_DT44_DC45NANNANT00.52 BB16
1905cpj_J_DC45_DC46NANNANT00.53 BB01
1915cpj_J_DC46_DA47NANNANT00.70 BB00
1925cpj_J_DA47_DT48NANNANT00.68 BB08
1935cpj_J_DT48_DT49BBBBB01510.38 BB01
1945cpj_J_DT49_5CM50A-BAB03300.30 AB03
1955cpj_J_5CM50_DG51A-BAB03920.19 AB03
1965cpj_J_DG51_DA52BBBBB00420.30 BB00
1975cpj_J_DA52_DA53NANNANT00.22 BB10
1985cpj_J_DA53_DG54NANNANT00.38 AB03
1995cpj_J_DG54_DA55BBBBB00660.19 BB00
2005cpj_J_DA55_DT56miBBB10790.30 BB10
2015cpj_J_DT56_DT57B12BB04780.20 BB04
2025cpj_J_DT57_DC58BBBBB00700.38 BB00
2035cpj_J_DC58_DC59BB2BB07180.41 BB07
2045cpj_J_DC59_DA60NANNANT00.36 BB03
2055cpj_J_DA60_DT61B12BB04210.41 BB04
2065cpj_J_DT61_DT62NANNANT00.30 BB15
2075cpj_J_DT62_DT63miBBB10380.29 BB10
2085cpj_J_DT63_DG64NANNANT00.36 BB04
2095cpj_J_DG64_DA65NANNANT00.28 BB04
2105cpj_J_DA65_DG66NANNANT00.53 BB02
2115cpj_J_DG66_DC67miBBB10360.46 BB10
2125cpj_J_DC67_DC68BB2BB07880.24 BB07
2135cpj_J_DC68_DT69BBBBB00260.33 BB00
2145cpj_J_DT69_DG70B-ABA17620.41 BA17
2155cpj_J_DG70_DT71NANNANT00.45 BB01
2165cpj_J_DT71_DT72BBBBB00790.18 BB00
2175cpj_J_DT72_5CM73B-ABA01180.22 BA01
2185cpj_J_5CM73_DG74NANNANT00.54 AB03
2195cpj_J_DG74_DA75BBBBB00480.25 BB00
2205cpj_J_DA75_DA76B12BB04100.25 BB04
2215cpj_J_DA76_DA77B12BB04710.21 BB04
2225cpj_J_DA77_DA78B12BB04150.34 BB04
2235cpj_J_DA78_DT79B12BB04730.28 BB04
2245cpj_J_DT79_DT80miBBB10440.53 BB10
2255cpj_J_DT80_DC81B12BB04330.38 BB04
2265cpj_J_DC81_DC82B12BB04210.37 BB04
2275cpj_J_DC82_DA83BBwBB16640.61 BB16
2285cpj_J_DA83_DT84miBBB15340.32 BB15
2295cpj_J_DT84_DT85NANNANT00.41 BA08
2305cpj_J_DT85_DT86BBBBB00580.38 BB00
2315cpj_J_DT86_DG87BBBBB00500.36 BB00
2325cpj_J_DG87_DA88BBBBB00730.32 BB00
2335cpj_J_DA88_DG89NANNANT00.37 BB07
2345cpj_J_DG89_DT90B12BB04510.34 BB04
2355cpj_J_DT90_DC91B12BB04520.29 BB04
2365cpj_J_DC91_DC92NANNANT00.63 BB10
2375cpj_J_DC92_DA93NANNANT00.74 AB02
2385cpj_J_DA93_DA94NANNANT00.84 BB07
2395cpj_J_DA94_DC95miBBB12230.56 BB12
2405cpj_J_DC95_DC96NANNANT00.55 BB10
2415cpj_J_DC96_DA97B12BB04320.49 BB04
2425cpj_J_DA97_DA98BBBBB00340.39 BB00
2435cpj_J_DA98_DT99NANNANT00.58 BB17
2445cpj_J_DT99_DG100NANNANT00.48 BB07
2455cpj_J_DG100_DA101BBBBB00440.27 BB00
2465cpj_J_DA101_DT102NANNANT00.41 BA13
2475cpj_J_DT102_DT103BBwBB16350.29 BB16
2485cpj_J_DT103_DC104NANNANT00.41 BB04
2495cpj_J_DC104_DC105NANNANT00.47 BA13
2505cpj_J_DC105_DA106NANNANT00.77 BB10
2515cpj_J_DA106_DT107miBBB13260.43 BB13
2525cpj_J_DT107_DT108BBwBB03320.58 BB03
2535cpj_J_DT108_DC109BB2BB07270.31 BB07
2545cpj_J_DC109_DA110BBBBB00490.37 BB00
2555cpj_J_DA110_DT111BBBBB00700.27 BB00
2565cpj_J_DT111_DT112BBBBB00550.30 BB00
2575cpj_J_DT112_DT113BBBBB00630.27 BB00
2585cpj_J_DT113_DC114NANNANT00.36 BB02
2595cpj_J_DC114_DC115BBBBB00240.55 BB00
2605cpj_J_DC115_DA116B12BB05760.33 BB05
2615cpj_J_DA116_DT117BBBBB00310.62 BB00
2625cpj_J_DT117_DT118miBBB13380.42 BB13
2635cpj_J_DT118_DC119NANNANT00.75 BB16
2645cpj_J_DC119_DA120miBBB12590.49 BB12
2655cpj_J_DA120_DA121BBBBB00360.38 BB00
2665cpj_J_DA121_DT122BBBBB00630.25 BB00
2675cpj_J_DT122_DG123B12BB04730.19 BB04
2685cpj_J_DG123_DA124B12BB04670.21 BB04
2695cpj_J_DA124_DT125NANNANT00.43 AA10
2705cpj_J_DT125_DT126NANNANT00.74 AB05
2715cpj_J_DT126_DC127miBBB10450.44 BB10
2725cpj_J_DC127_DC128NANNANT00.64 BB02
2735cpj_J_DC128_DA129NANNANT00.45 BB11
2745cpj_J_DA129_DT130NANNANT00.61 AA10
2755cpj_J_DT130_DT131NANNANT00.48 BB11
2765cpj_J_DT131_5CM132NANNANT00.61 BA05
2775cpj_J_5CM132_DG133NANNANT00.65 BB04
2785cpj_J_DG133_DA134BBwBB03660.36 BB03
2795cpj_J_DA134_DA135BBBBB00410.55 BB00
2805cpj_J_DA135_DT136B12BB05300.51 BB05
2815cpj_J_DT136_DC137BBBBB01620.30 BB01
2825cpj_J_DC137_DC138NANNANT00.71 BB11
2835cpj_J_DC138_DA139BB2BB07480.37 BB07
2845cpj_J_DA139_DT140BBBBB00110.45 BB00
2855cpj_J_DT140_DT141B-ABA09600.48 BA09
2865cpj_J_DT141_DT142NANNANT00.69 AB05
2875cpj_J_DT142_DG143miBBB15580.31 BB15
2885cpj_J_DG143_DG144BBBBB0190.35 BB01
2895cpj_J_DG144_DA145BBBBB01180.56 BB01
2905cpj_J_DA145_DT146NANNANT00.68 BA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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