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Conformers: ABBIImiBZICOPNSYNN
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Nucleosome containing unmethylated Sat2R DNA

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015cpi_I_DA1_DT2BBwBB03510.30 BB03
0025cpi_I_DT2_DC3NANNANT00.59 BB02
0035cpi_I_DC3_DC4BBwBB03790.23 BB03
0045cpi_I_DC4_DA5BBwBB0280.71 BB02
0055cpi_I_DA5_DA6NANNANT00.52 BB05
0065cpi_I_DA6_DA7BBBBB00280.46 BB00
0075cpi_I_DA7_DT8NANNANT00.42 BB17
0085cpi_I_DT8_DG9NANNANT00.55 BB05
0095cpi_I_DG9_DG10BBBBB00450.59 BB00
0105cpi_I_DG10_DA11B-ABA17650.43 BA17
0115cpi_I_DA11_DT12A-BAB01570.37 AB01
0125cpi_I_DT12_DT13BBwBB02230.39 BB02
0135cpi_I_DT13_DC14BBBBB00130.39 BB00
0145cpi_I_DC14_DG15NANNANT00.67 BB00
0155cpi_I_DG15_DA16BBwBB16480.61 BB16
0165cpi_I_DA16_DA17BB2BB07100.38 BB07
0175cpi_I_DA17_DT18B12BB04310.30 BB04
0185cpi_I_DT18_DG19miBBB13350.39 BB13
0195cpi_I_DG19_DG20BBwBB16270.35 BB16
0205cpi_I_DG20_DA21NANNANT00.52 BB02
0215cpi_I_DA21_DA22BBBBB00140.37 BB00
0225cpi_I_DA22_DT23BBBBB00150.23 BB00
0235cpi_I_DT23_DC24NANNANT00.50 BB05
0245cpi_I_DC24_DA25miBBB13550.37 BB13
0255cpi_I_DA25_DT26BBwBB16400.51 BB16
0265cpi_I_DT26_DT27BB2BB07310.32 BB07
0275cpi_I_DT27_DG28BBBBB00500.36 BB00
0285cpi_I_DG28_DA29BB2BB08840.22 BB08
0295cpi_I_DA29_DA30miBBB15510.46 BB15
0305cpi_I_DA30_DT31miBBB15700.25 BB15
0315cpi_I_DT31_DG32miBBB15600.37 BB15
0325cpi_I_DG32_DG33B12BB04510.22 BB04
0335cpi_I_DG33_DA34miBBB13760.27 BB13
0345cpi_I_DA34_DA35BBwBB16340.65 BB16
0355cpi_I_DA35_DA36miBBB13820.17 BB13
0365cpi_I_DA36_DT37NANNANT00.48 BB02
0375cpi_I_DT37_DG38NANNANT00.39 BB15
0385cpi_I_DG38_DA39B12BB04230.28 BB04
0395cpi_I_DA39_DA40miBBB12550.38 BB12
0405cpi_I_DA40_DT41NANNANT00.66 BB02
0415cpi_I_DT41_DG42miBBB13590.38 BB13
0425cpi_I_DG42_DG43NANNANT00.58 BB10
0435cpi_I_DG43_DA44NANNANT00.35 BB02
0445cpi_I_DA44_DA45NANNANT00.38 BB13
0455cpi_I_DA45_DT46NANNANT00.26 BB03
0465cpi_I_DT46_DC47NANNANT00.46 BB02
0475cpi_I_DC47_DA48NANNANT00.69 BB02
0485cpi_I_DA48_DT49miBBB10230.45 BB10
0495cpi_I_DT49_DT50BBBBB01500.29 BB01
0505cpi_I_DT50_DG51BBBBB00480.29 BB00
0515cpi_I_DG51_DG52NANNANT00.84 BB02
0525cpi_I_DG52_DT53BBBBB00240.38 BB00
0535cpi_I_DT53_DT54miBBB10270.31 BB10
0545cpi_I_DT54_DG55miBBB13260.45 BB13
0555cpi_I_DG55_DG56NANNANT00.90 BB13
0565cpi_I_DG56_DA57miBBB10790.25 BB10
0575cpi_I_DA57_DC58miBBB12220.44 BB12
0585cpi_I_DC58_DT59BBBBB00140.47 BB00
0595cpi_I_DT59_DC60BBBBB00610.29 BB00
0605cpi_I_DC60_DA61BBBBB00300.55 BB00
0615cpi_I_DA61_DA62BBwBB02150.44 BB02
0625cpi_I_DA62_DA63NANNANT00.38 BB10
0635cpi_I_DA63_DT64B12BB04570.27 BB04
0645cpi_I_DT64_DG65NANNANT00.50 BB10
0655cpi_I_DG65_DG66BBBBB00170.35 BB00
0665cpi_I_DG66_DA67BB2BB07160.26 BB07
0675cpi_I_DA67_DA68BBBBB00140.43 BB00
0685cpi_I_DA68_DT69NANNANT00.33 BA17
0695cpi_I_DT69_DT70BBBBB00270.32 BB00
0705cpi_I_DT70_DT71BBwBB02510.36 BB02
0715cpi_I_DT71_DT72BBBBB00310.48 BB00
0725cpi_I_DT72_DC73BBBBB00680.32 BB00
0735cpi_I_DC73_DG74B12BB04420.23 BB04
0745cpi_I_DG74_DA75BBwBB02200.41 BB02
0755cpi_I_DA75_DA76NANNANT00.35 BB00
0765cpi_I_DA76_DC77BB2BB07240.27 BB07
0775cpi_I_DC77_DA78BBBBB00630.27 BB00
0785cpi_I_DA78_DG79BB2BB07140.43 BB07
0795cpi_I_DG79_DG80BBBBB00220.33 BB00
0805cpi_I_DG80_DC81miBBB10350.57 BB10
0815cpi_I_DC81_DT82BBBBB00360.21 BB00
0825cpi_I_DT82_DC83NANNANT00.54 BA08
0835cpi_I_DC83_DA84BBwBB16450.70 BB16
0845cpi_I_DA84_DA85B12BB04760.21 BB04
0855cpi_I_DA85_DA86NANNANT00.42 BB10
0865cpi_I_DA86_DT87B-ABA0540.39 BA05
0875cpi_I_DT87_DG88NANNANT00.49 BB07
0885cpi_I_DG88_DG89BBBBB00300.42 BB00
0895cpi_I_DG89_DA90BB2BB07730.40 BB07
0905cpi_I_DA90_DA91BBBBB00370.15 BB00
0915cpi_I_DA91_DT92BBBBB01140.33 BB01
0925cpi_I_DT92_DC93NANNANT00.58 AA02
0935cpi_I_DC93_DT94NANNANT00.29 BB10
0945cpi_I_DT94_DT95B-ABA05180.51 BA05
0955cpi_I_DT95_DC96NANNANT00.63 BB08
0965cpi_I_DC96_DG97BBBBB00490.40 BB00
0975cpi_I_DG97_DA98BBBBB00600.28 BB00
0985cpi_I_DA98_DA99BB2BB07510.30 BB07
0995cpi_I_DA99_DT100BBBBB00600.24 BB00
1005cpi_I_DT100_DG101BB2BB08570.36 BB08
1015cpi_I_DG101_DG102NANNANT00.55 BB10
1025cpi_I_DG102_DA103B12BB04240.56 BB04
1035cpi_I_DA103_DT104BBwBB02360.36 BB02
1045cpi_I_DT104_DT105NANNANT00.47 BB05
1055cpi_I_DT105_DC106BBwBB16850.33 BB16
1065cpi_I_DC106_DG107BBwBB02410.38 BB02
1075cpi_I_DG107_DA108BB2BB08420.52 BB08
1085cpi_I_DA108_DA109miBBB15400.39 BB15
1095cpi_I_DA109_DT110BBBBB00650.37 BB00
1105cpi_I_DT110_DG111BBBBB00600.30 BB00
1115cpi_I_DG111_DT112BBBBB00720.33 BB00
1125cpi_I_DT112_DA113BBwBB02410.35 BB02
1135cpi_I_DA113_DA114miBBB12490.50 BB12
1145cpi_I_DA114_DT115BBwBB16800.32 BB16
1155cpi_I_DT115_DC116NANNANT00.82 BB02
1165cpi_I_DC116_DA117BBBBB00500.48 BB00
1175cpi_I_DA117_DT118B12BB05350.33 BB05
1185cpi_I_DT118_DT119B-ABA05210.32 BA05
1195cpi_I_DT119_DT120BBBBB00170.28 BB00
1205cpi_I_DT120_DT121B12BB04650.35 BB04
1215cpi_I_DT121_DC122BBBBB00490.34 BB00
1225cpi_I_DC122_DG123NANNANT00.48 BA05
1235cpi_I_DG123_DA124BBBBB00120.40 BB00
1245cpi_I_DA124_DA125B12BB05580.32 BB05
1255cpi_I_DA125_DT126BBwBB16560.39 BB16
1265cpi_I_DT126_DG127NANNANT00.59 BB00
1275cpi_I_DG127_DG128miBBB13600.50 BB13
1285cpi_I_DG128_DA129NANNANT00.52 BA10
1295cpi_I_DA129_DT130NANNANT00.60 BB16
1305cpi_I_DT130_DT131BBwBB02260.33 BB02
1315cpi_I_DT131_DC132NANNANT00.46 BB10
1325cpi_I_DC132_DG133BBBBB00670.39 BB00
1335cpi_I_DG133_DA134NANNANT00.53 BB08
1345cpi_I_DA134_DA135BBBBB00660.28 BB00
1355cpi_I_DA135_DT136miBBB12470.47 BB12
1365cpi_I_DT136_DG137BBwBB16400.39 BB16
1375cpi_I_DG137_DG138BBwBB02300.28 BB02
1385cpi_I_DG138_DA139NANNANT00.45 BB11
1395cpi_I_DA139_DA140NANNANT00.58 BB10
1405cpi_I_DA140_DT141B-ABA05770.36 BA05
1415cpi_I_DT141_DC142BBBBB01520.31 BB01
1425cpi_I_DC142_DT143NANNANT00.53 BA05
1435cpi_I_DT143_DG144NANNANT00.86 AB03
1445cpi_I_DG144_DA145BBBBB00660.19 BB00
1455cpi_I_DA145_DT146NANNANT00.81 BB02
1465cpi_J_DA1_DT2BBwBB03600.24 BB03
1475cpi_J_DT2_DC3miBBB15780.32 BB15
1485cpi_J_DC3_DA4NANNANT00.71 BB10
1495cpi_J_DA4_DG5NANNANT00.57 BB04
1505cpi_J_DG5_DA6miBBB13230.42 BB13
1515cpi_J_DA6_DT7NANNANT00.66 BB02
1525cpi_J_DT7_DT8NANNANT00.61 BB02
1535cpi_J_DT8_DC9NANNANT00.82 BB03
1545cpi_J_DC9_DC10NANNANT00.81 BB15
1555cpi_J_DC10_DA11NANNANT00.56 BB08
1565cpi_J_DA11_DT12NANNANT00.64 BB16
1575cpi_J_DT12_DT13BB2BB08100.36 BB08
1585cpi_J_DT13_DC14NANNANT00.49 BB00
1595cpi_J_DC14_DG15BBwBB16420.70 BB16
1605cpi_J_DG15_DA16BBwBB02600.36 BB02
1615cpi_J_DA16_DA17BBBBB00450.30 BB00
1625cpi_J_DA17_DT18BB2BB0770.40 BB07
1635cpi_J_DT18_DC19NANNANT00.60 BA10
1645cpi_J_DC19_DC20NANNANT00.47 BB02
1655cpi_J_DC20_DA21BBBBB00150.46 BB00
1665cpi_J_DA21_DT22BBBBB00490.35 BB00
1675cpi_J_DT22_DT23BBBBB00920.18 BB00
1685cpi_J_DT23_DC24BBBBB00150.50 BB00
1695cpi_J_DC24_DG25BBwBB11510.24 BB11
1705cpi_J_DG25_DA26BBwBB03450.46 BB03
1715cpi_J_DA26_DA27BB2BB08400.40 BB08
1725cpi_J_DA27_DA28BBBBB00200.40 BB00
1735cpi_J_DA28_DA29NANNANT00.44 BB02
1745cpi_J_DA29_DT30NANNANT00.30 BB01
1755cpi_J_DT30_DG31BBBBB00440.19 BB00
1765cpi_J_DG31_DA32BBwBB02400.33 BB02
1775cpi_J_DA32_DT33BBBBB00210.41 BB00
1785cpi_J_DT33_DT34B12BB05170.36 BB05
1795cpi_J_DT34_DA35NANNANT00.57 BB15
1805cpi_J_DA35_DC36NANNANT00.88 BB08
1815cpi_J_DC36_DA37BBwBB03260.43 BB03
1825cpi_J_DA37_DT38BBBBB00590.26 BB00
1835cpi_J_DT38_DT39BB2BB07710.20 BB07
1845cpi_J_DT39_DC40NANNANT00.54 BB10
1855cpi_J_DC40_DG41NANNANT00.68 BB07
1865cpi_J_DG41_DA42BBBBB00130.44 BB00
1875cpi_J_DA42_DA43BBBBB01700.32 BB01
1885cpi_J_DA43_DT44miBBB13290.46 BB13
1895cpi_J_DT44_DC45BBBBB01440.46 BB01
1905cpi_J_DC45_DC46BBBBB00180.36 BB00
1915cpi_J_DC46_DA47BBwBB02220.45 BB02
1925cpi_J_DA47_DT48BB2BB08320.59 BB08
1935cpi_J_DT48_DT49BBBBB00390.63 BB00
1945cpi_J_DT49_DC50B-ABA08570.43 BA08
1955cpi_J_DC50_DG51NANNANT00.30 BB10
1965cpi_J_DG51_DA52miBBB15540.26 BB15
1975cpi_J_DA52_DA53BBBBB00520.38 BB00
1985cpi_J_DA53_DG54BBBBB00480.41 BB00
1995cpi_J_DG54_DA55NANNANT00.38 BB10
2005cpi_J_DA55_DT56B12BB04240.29 BB04
2015cpi_J_DT56_DT57B12BB04500.20 BB04
2025cpi_J_DT57_DC58BBBBB00660.34 BB00
2035cpi_J_DC58_DC59NANNANT00.44 BB07
2045cpi_J_DC59_DA60NANNANT00.58 BB05
2055cpi_J_DA60_DT61B12BB04130.37 BB04
2065cpi_J_DT61_DT62miBBB15450.23 BB15
2075cpi_J_DT62_DT63NANNANT00.43 BB02
2085cpi_J_DT63_DG64B12BB04280.33 BB04
2095cpi_J_DG64_DA65BBBBB00500.46 BB00
2105cpi_J_DA65_DG66BBwBB02100.54 BB02
2115cpi_J_DG66_DC67BBBBB00490.38 BB00
2125cpi_J_DC67_DC68B12BB04410.32 BB04
2135cpi_J_DC68_DT69BBBBB00570.28 BB00
2145cpi_J_DT69_DG70BB2BB07380.27 BB07
2155cpi_J_DG70_DT71B12BB04750.24 BB04
2165cpi_J_DT71_DT72BBBBB00760.17 BB00
2175cpi_J_DT72_DC73B12BB04220.29 BB04
2185cpi_J_DC73_DG74BBBBB00680.14 BB00
2195cpi_J_DG74_DA75B12BB04710.27 BB04
2205cpi_J_DA75_DA76BBBBB00730.25 BB00
2215cpi_J_DA76_DA77B12BB04790.18 BB04
2225cpi_J_DA77_DA78B-ABA08470.42 BA08
2235cpi_J_DA78_DT79A-BAB01200.50 AB01
2245cpi_J_DT79_DT80NANNANT00.60 BB10
2255cpi_J_DT80_DC81NANNANT00.82 BB16
2265cpi_J_DC81_DC82NANNANT00.63 BB04
2275cpi_J_DC82_DA83BBBBB00250.26 BB00
2285cpi_J_DA83_DT84BBwBB02190.40 BB02
2295cpi_J_DT84_DT85B12BB04320.32 BB04
2305cpi_J_DT85_DT86BBBBB00360.36 BB00
2315cpi_J_DT86_DG87BBBBB00560.20 BB00
2325cpi_J_DG87_DA88B12BB04330.22 BB04
2335cpi_J_DA88_DG89BBBBB00560.34 BB00
2345cpi_J_DG89_DT90BB2BB07250.31 BB07
2355cpi_J_DT90_DC91B12BB04780.28 BB04
2365cpi_J_DC91_DC92NANNANT00.48 BB02
2375cpi_J_DC92_DA93NANNANT00.65 BB10
2385cpi_J_DA93_DA94NANNANT00.68 BB07
2395cpi_J_DA94_DC95miBBB12510.39 BB12
2405cpi_J_DC95_DC96NANNANT00.67 BB10
2415cpi_J_DC96_DA97NANNANT00.70 BB02
2425cpi_J_DA97_DA98BBBBB00190.46 BB00
2435cpi_J_DA98_DT99B12BB04180.29 BB04
2445cpi_J_DT99_DG100B12BB04390.51 BB04
2455cpi_J_DG100_DA101BBwBB02260.45 BB02
2465cpi_J_DA101_DT102BB2BB08260.59 BB08
2475cpi_J_DT102_DT103miBBB15330.50 BB15
2485cpi_J_DT103_DC104B12BB04800.25 BB04
2495cpi_J_DC104_DC105NANNANT00.34 BB05
2505cpi_J_DC105_DA106NANNANT00.79 BB02
2515cpi_J_DA106_DT107NANNANT00.50 BB12
2525cpi_J_DT107_DT108NANNANT00.69 BB03
2535cpi_J_DT108_DC109B12BB04580.25 BB04
2545cpi_J_DC109_DA110BBBBB00750.18 BB00
2555cpi_J_DA110_DT111BBBBB00780.31 BB00
2565cpi_J_DT111_DT112BBBBB00770.23 BB00
2575cpi_J_DT112_DT113BBBBB00610.30 BB00
2585cpi_J_DT113_DC114NANNANT00.34 BB02
2595cpi_J_DC114_DC115NANNANT00.53 BB15
2605cpi_J_DC115_DA116B12BB05680.30 BB05
2615cpi_J_DA116_DT117NANNANT00.51 BB15
2625cpi_J_DT117_DT118NANNANT00.45 BB13
2635cpi_J_DT118_DC119NANNANT00.54 BB02
2645cpi_J_DC119_DA120miBBB13700.34 BB13
2655cpi_J_DA120_DA121NANNANT00.70 BB16
2665cpi_J_DA121_DT122BBwBB02380.22 BB02
2675cpi_J_DT122_DG123miBBB10490.35 BB10
2685cpi_J_DG123_DA124NANNANT00.76 BB03
2695cpi_J_DA124_DT125NANNANT00.78 BB12
2705cpi_J_DT125_DT126NANNANT00.61 BB13
2715cpi_J_DT126_DC127NANNANT00.45 BB10
2725cpi_J_DC127_DC128BBwBB03380.37 BB03
2735cpi_J_DC128_DA129B12BB04160.48 BB04
2745cpi_J_DA129_DT130B12BB04530.32 BB04
2755cpi_J_DT130_DT131NANNANT00.47 BB08
2765cpi_J_DT131_DC132BBBBB00470.40 BB00
2775cpi_J_DC132_DG133BB2BB07300.31 BB07
2785cpi_J_DG133_DA134BBwBB03490.24 BB03
2795cpi_J_DA134_DA135NANNANT00.45 BB02
2805cpi_J_DA135_DT136BBwBB02190.40 BB02
2815cpi_J_DT136_DC137BBBBB00270.41 BB00
2825cpi_J_DC137_DC138NANNANT00.64 BA10
2835cpi_J_DC138_DA139A-BAB03470.29 AB03
2845cpi_J_DA139_DT140BBBBB00760.34 BB00
2855cpi_J_DT140_DT141B-ABA09700.40 BA09
2865cpi_J_DT141_DT142NANNANT00.45 BB16
2875cpi_J_DT142_DG143BBwBB02110.47 BB02
2885cpi_J_DG143_DG144NANNANT00.40 BB00
2895cpi_J_DG144_DA145B12BB04100.43 BB04
2905cpi_J_DA145_DT146NANNANT00.92 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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