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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure-guided design of self-assembling RNA nano triangles

Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015cnr_A_G3_U4AAAAA00910.09 AA00
025cnr_A_U4_C5AAAAA00890.15 AA00
035cnr_A_C5_U6AAAAA00820.14 AA00
045cnr_A_U6_A7AAwAA10930.16 AA10
055cnr_A_A7_C8AAAAA08930.20 AA08
065cnr_A_C8_C9AAAAA08710.33 AA08
075cnr_A_C9_C10NANNANT01.09 OP31
085cnr_A_C10_A11AAAAA00170.44 AA00
095cnr_A_A11_C12AAAAA00730.30 AA00
105cnr_A_C12_C13AAAAA00740.29 AA00
115cnr_A_C13_U14AAAAA00920.13 AA00
125cnr_A_U14_C15AAAAA00980.10 AA00
135cnr_A_C15_G16AAAAA08760.22 AA08
145cnr_A_G16_C17AAAAA00960.09 AA00
155cnr_A_C17_C18AAAAA00970.14 AA00
165cnr_B_A37_G38AAAAA00620.22 AA00
175cnr_B_G38_A39NANNANT01.38 IC04
185cnr_B_A39_G40NANNANT01.75 BB00
195cnr_B_G40_G41OPNOP12720.44 OP12
205cnr_B_G41_A42AAAAA00820.10 AA00
215cnr_B_A42_C43AAAAA08860.16 AA08
225cnr_B_C43_G44AAwAA10280.31 AA10
235cnr_B_G44_G45AAAAA08220.33 AA08
245cnr_B_G45_C46AAAAA00900.10 AA00
255cnr_B_C46_G47AAAAA00960.17 AA00
265cnr_E_G3_U4AAAAA00890.16 AA00
275cnr_E_U4_C5AAwAA06780.20 AA06
285cnr_E_C5_U6AAAAA00420.34 AA00
295cnr_E_U6_A7AAAAA08220.30 AA08
305cnr_E_A7_C8AAAAA08740.25 AA08
315cnr_E_C8_C9NANNANT00.85 AA08
325cnr_E_C9_C10NANNANT01.10 OP31
335cnr_E_C10_A11NANNANT00.56 AA03
345cnr_E_A11_C12AAwAA10780.24 AA10
355cnr_E_C12_C13AAAAA08500.42 AA08
365cnr_E_C13_U14AAAAA00780.21 AA00
375cnr_E_U14_C15AAAAA00870.10 AA00
385cnr_E_C15_G16AAAAA00810.19 AA00
395cnr_E_G16_C17AAAAA00900.11 AA00
405cnr_E_C17_C18AAAAA00930.18 AA00
415cnr_F_A37_G38AAAAA08420.29 AA08
425cnr_F_G38_A39NANNANT01.35 OP23
435cnr_F_A39_G40NANNANT00.90 OP04
445cnr_F_G40_G41NANNANT00.54 OP12
455cnr_F_G41_A42NANNANT00.35 AA04
465cnr_F_A42_C43NANNANT00.48 AA08
475cnr_F_C43_G44AAAAA00560.29 AA00
485cnr_F_G44_G45AAAAA00420.29 AA00
495cnr_F_G45_C46AAAAA00830.11 AA00
505cnr_F_C46_G47AAAAA00930.10 AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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