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Conformers: ABBIImiBZICOPNSYNN
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2.65 structure of S.aureus DNA gyrase and artificially nicked DNA

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015cdr_E_DA1_DG2SYNBBS1490.37 BBS1
025cdr_E_DG2_DC3B-ABA08740.26 BA08
035cdr_E_DC3_DC4AAAAA02740.31 AA02
045cdr_E_DC4_DG5NANNANT00.46 AB04
055cdr_E_DG5_DT6BB2BB08690.33 BB08
065cdr_E_DT6_DA7B-ABA10280.44 BA10
075cdr_E_DA7_DG8A-BAB05420.25 AB05
085cdr_G_DG2009_DT2010A-BAB05320.40 AB05
095cdr_G_DT2010_DA2011NANNANT00.73 IC06
105cdr_G_DA2011_DC2012A-BAB03620.22 AB03
115cdr_G_DC2012_DC2013B-ABA16420.34 BA16
125cdr_G_DC2013_DT2014AAAAA08840.20 AA08
135cdr_G_DT2014_DA2015A-BAB05560.37 AB05
145cdr_G_DA2015_DC2016B-ABA05270.36 BA05
155cdr_G_DC2016_DG2017NANNANT00.38 AB01
165cdr_G_DG2017_DG2018BBBBB00880.16 BB00
175cdr_G_DG2018_DC2019B-ABA08700.34 BA08
185cdr_G_DC2019_DT2020AAAAA00320.40 AA00
195cdr_F_DA1_DG2NANNANT00.53 BBS1
205cdr_F_DG2_DC3B-ABA08740.27 BA08
215cdr_F_DC3_DC4AAAAA02740.31 AA02
225cdr_F_DC4_DG5NANNANT00.46 AB04
235cdr_F_DG5_DT6BB2BB08690.32 BB08
245cdr_F_DT6_DA7B-ABA10280.44 BA10
255cdr_F_DA7_DG8A-BAB05420.26 AB05
265cdr_F_DC2013_DT2014AAAAA08840.20 AA08
275cdr_F_DT2014_DA2015A-BAB05570.37 AB05
285cdr_F_DA2015_DC2016B-ABA05270.36 BA05
295cdr_F_DC2016_DG2017NANNANT00.39 AB01
305cdr_F_DG2017_DG2018BBBBB00890.16 BB00
315cdr_F_DG2018_DC2019B-ABA13660.27 BA13
325cdr_F_DC2019_DT.A2020NANNANT00.92 OP12
335cdr_F_DC2019_DT.B2020NANNANT00.82 OP29

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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