Conformers:
ABBIImiBZICOPNSYNN
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2.45A structure of etoposide with S.aureus DNA gyrase and DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 5cdp_E_DA1_DG2 | SYN | BBS1 | 68 | 0.31 |
| 02 | 5cdp_E_DG2_DC3 | B-A | BA17 | 68 | 0.27 |
| 03 | 5cdp_E_DC3_DC4 | AAA | AA02 | 77 | 0.31 |
| 04 | 5cdp_E_DC4_DG5 | NAN | NANT | 0 | 0.44 |
| 05 | 5cdp_E_DG5_DT6 | BB2 | BB08 | 75 | 0.33 |
| 06 | 5cdp_E_DT6_DA7 | B-A | BA10 | 43 | 0.40 |
| 07 | 5cdp_E_DA7_DG8 | AAA | AA00 | 16 | 0.25 |
| 08 | 5cdp_G_DG2009_DT2010 | B-A | BA01 | 46 | 0.24 |
| 09 | 5cdp_G_DT2010_DA2011 | A-B | AB03 | 76 | 0.16 |
| 10 | 5cdp_G_DA2011_DC2012 | B-A | BA10 | 97 | 0.14 |
| 11 | 5cdp_G_DC2012_DC2013 | AAA | AA00 | 48 | 0.33 |
| 12 | 5cdp_G_DC2013_DT2014 | AAA | AA00 | 86 | 0.21 |
| 13 | 5cdp_G_DT2014_DA2015 | A-B | AB04 | 80 | 0.29 |
| 14 | 5cdp_G_DA2015_DC2016 | B-A | BA05 | 57 | 0.31 |
| 15 | 5cdp_G_DC2016_DG2017 | NAN | NANT | 0 | 0.42 |
| 16 | 5cdp_G_DG2017_DG2018 | BBB | BB00 | 87 | 0.16 |
| 17 | 5cdp_G_DG2018_DC2019 | B-A | BA16 | 83 | 0.23 |
| 18 | 5cdp_G_DC2019_DT2020 | AAA | AA00 | 59 | 0.29 |
| 19 | 5cdp_F_DA1_DG2 | NAN | NANT | 0 | 0.71 |
| 20 | 5cdp_F_DG2_DC3 | B-A | BA17 | 88 | 0.19 |
| 21 | 5cdp_F_DC3_DC4 | AAA | AA02 | 76 | 0.30 |
| 22 | 5cdp_F_DC4_DG5 | NAN | NANT | 0 | 0.42 |
| 23 | 5cdp_F_DG5_DT6 | BB2 | BB08 | 75 | 0.33 |
| 24 | 5cdp_F_DT6_DA7 | B-A | BA10 | 41 | 0.42 |
| 25 | 5cdp_F_DA7_DG8 | AAA | AA00 | 61 | 0.24 |
| 26 | 5cdp_H_DG.A2009_DT2010 | AAA | AA00 | 12 | 0.36 |
| 27 | 5cdp_H_DG.B2009_DT2010 | AAA | AA00 | 12 | 0.36 |
| 28 | 5cdp_H_DT2010_DA2011 | NAN | NANT | 0 | 0.66 |
| 29 | 5cdp_H_DA2011_DC2012 | NAN | NANT | 0 | 0.69 |
| 30 | 5cdp_H_DC2012_DC2013 | NAN | NANT | 0 | 0.41 |
| 31 | 5cdp_H_DC2013_DT2014 | AAA | AA00 | 86 | 0.22 |
| 32 | 5cdp_H_DT2014_DA2015 | A-B | AB04 | 81 | 0.29 |
| 33 | 5cdp_H_DA2015_DC2016 | B-A | BA05 | 53 | 0.33 |
| 34 | 5cdp_H_DC2016_DG2017 | NAN | NANT | 0 | 0.43 |
| 35 | 5cdp_H_DG2017_DG2018 | BBB | BB00 | 88 | 0.15 |
| 36 | 5cdp_H_DG2018_DC2019 | NAN | NANT | 0 | 0.43 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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