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Conformers: ABBIImiBZICOPNSYNN
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Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys

Results of the assignment of 147 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015cd1_M_G0_G1AAAAA00170.49 AA00
0025cd1_M_G1_C2AAAAA00640.23 AA00
0035cd1_M_C2_C3AAAAA00680.25 AA00
0045cd1_M_C3_C4AAwAA01960.14 AA01
0055cd1_M_C4_G5AAAAA08820.21 AA08
0065cd1_M_G5_G6AAwAA01620.36 AA01
0075cd1_M_G6_A7NANNANT00.52 AA01
0085cd1_M_A7_U8OPNOP11760.24 OP11
0095cd1_M_U8_A9ICLIC02480.31 IC02
0105cd1_M_A9_G10NANNANT01.61 OP04
0115cd1_M_G10_C11AAAAA08740.21 AA08
0125cd1_M_C11_U12AAAAA08920.20 AA08
0135cd1_M_U12_C13AAwAA01810.29 AA01
0145cd1_M_C13_A14AAAAA08920.19 AA08
0155cd1_M_A14_G15OPNOP28750.13 OP28
0165cd1_M_G15_U16NANNANT01.07 OP17
0175cd1_M_U16_C17NANNANT01.68 OPS1
0185cd1_M_C17_G18NANNANT00.78 OP16
0195cd1_M_G18_G19NANNANT01.03 OP02
0205cd1_M_G19_U20NANNANT00.74 OP29
0215cd1_M_U20_A21NANNANT01.12 IC05
0225cd1_M_A21_G22NANNANT01.18 OP19
0235cd1_M_G22_A23AAwAA10850.13 AA10
0245cd1_M_A23_G24AAAAA00750.19 AA00
0255cd1_M_G24_C25AAAAA00800.16 AA00
0265cd1_M_C25_A26AAAAA08770.34 AA08
0275cd1_M_A26_U27AAAAA00760.27 AA00
0285cd1_M_U27_C28AAAAA08870.15 AA08
0295cd1_M_C28_A29AAAAA00840.11 AA00
0305cd1_M_A29_G30AAwAA01120.39 AA01
0315cd1_M_G30_A31AAAAA08840.25 AA08
0325cd1_M_A31_C32AAAAA00680.27 AA00
0335cd1_M_C32_U33NANNANT00.82 IC04
0345cd1_M_U33_U34NANNANT00.76 BA08
0355cd1_M_A37_A38AAuAA12520.36 AA12
0365cd1_M_A38_U39AAAAA00720.29 AA00
0375cd1_M_U39_C40AAwAA0190.54 AA01
0385cd1_M_C40_U41AAAAA00600.23 AA00
0395cd1_M_U41_G42AAAAA00780.19 AA00
0405cd1_M_G42_A43AAAAA00480.23 AA00
0415cd1_M_A43_G44AAAAA00690.18 AA00
0425cd1_M_G44_G45AAAAA08650.33 AA08
0435cd1_M_G45_G46ICLIC01540.25 IC01
0445cd1_M_G46_U47NANNANT00.92 OP12
0455cd1_M_U47_C48NANNANT00.88 OP01
0465cd1_M_C48_C49NANNANT01.47 OP05
0475cd1_M_C49_A50AAwAA01560.27 AA01
0485cd1_M_A50_G51AAAAA00680.19 AA00
0495cd1_M_G51_G52AAAAA00830.15 AA00
0505cd1_M_G52_G53AAAAA00830.21 AA00
0515cd1_M_G53_U54AAwAA01490.20 AA01
0525cd1_M_U54_U55NANNANT00.52 AA12
0535cd1_M_U55_C56NANNANT01.44 OP09
0545cd1_M_C56_A57NANNANT00.85 BB20
0555cd1_M_A57_A58NANNANT00.95 OPS1
0565cd1_M_A58_G59NANNANT00.52 OP29
0575cd1_M_G59_U60NANNANT01.74 ZZS2
0585cd1_M_U60_C61B-ABA08650.32 BA08
0595cd1_M_C61_C62AAAAA08600.39 AA08
0605cd1_M_C62_C63AAAAA08880.16 AA08
0615cd1_M_C63_U64AAAAA08890.21 AA08
0625cd1_M_U64_G65AAAAA08900.14 AA08
0635cd1_M_G65_U66AAAAA00690.20 AA00
0645cd1_M_U66_U67AAAAA08880.13 AA08
0655cd1_M_U67_C68AAAAA00670.20 AA00
0665cd1_M_C68_G69AAAAA00640.20 AA00
0675cd1_M_G69_G70AAAAA00710.27 AA00
0685cd1_M_G70_G71AAAAA00820.14 AA00
0695cd1_M_G71_C72AAAAA00840.19 AA00
0705cd1_M_C72_G73A-BAB05760.45 AB05
0715cd1_M_G73_C74NANNANT00.68 AB1S
0725cd1_M_C74_C75NANNANT01.88 ZZS2
0735cd1_N_G0_G1AAwAA05270.37 AA05
0745cd1_N_G1_C2AAAAA08900.19 AA08
0755cd1_N_C2_C3AAAAA08810.19 AA08
0765cd1_N_C3_C4AAAAA08780.19 AA08
0775cd1_N_C4_G5AAAAA00620.19 AA00
0785cd1_N_G5_G6AAwAA01570.33 AA01
0795cd1_N_G6_A7NANNANT00.53 AA01
0805cd1_N_A7_U8OPNOP11730.26 OP11
0815cd1_N_U8_A9ICLIC02320.36 IC02
0825cd1_N_A9_G10NANNANT01.67 OP25
0835cd1_N_G10_C11NANNANT00.37 AA06
0845cd1_N_C11_U12AAAAA08800.24 AA08
0855cd1_N_U12_C13AAwAA01830.24 AA01
0865cd1_N_C13_A14NANNANT00.59 AB2S
0875cd1_N_A14_G15NANNANT00.75 OP28
0885cd1_N_G15_U16NANNANT00.59 OP14
0895cd1_N_U16_C17NANNANT01.34 OP16
0905cd1_N_C17_G18NANNANT00.76 OP14
0915cd1_N_G18_G19NANNANT01.09 OP20
0925cd1_N_G19_U20NANNANT01.76 BB1S
0935cd1_N_U20_A21NANNANT01.26 IC05
0945cd1_N_A21_G22NANNANT00.72 OP27
0955cd1_N_G22_A23AAAAA04820.25 AA04
0965cd1_N_A23_G24AAAAA00660.22 AA00
0975cd1_N_G24_C25AAAAA00940.12 AA00
0985cd1_N_C25_A26AAAAA08720.41 AA08
0995cd1_N_A26_U27AAAAA08820.27 AA08
1005cd1_N_U27_C28AAAAA08950.16 AA08
1015cd1_N_C28_A29AAAAA00720.14 AA00
1025cd1_N_A29_G30AAwAA01350.35 AA01
1035cd1_N_G30_A31AAAAA08930.24 AA08
1045cd1_N_A31_C32AAAAA08940.11 AA08
1055cd1_N_C32_U33A-BAB05900.17 AB05
1065cd1_N_U33_U34NANNANT00.93 OP04
1075cd1_N_U34_U35NANNANT00.92 OP20
1085cd1_N_U35_U36NANNANT01.24 OP13
1095cd1_N_U36_A37NANNANT01.03 OPS1
1105cd1_N_A37_A38AAAAA00300.30 AA00
1115cd1_N_A38_U39AAAAA00730.24 AA00
1125cd1_N_U39_C40AAAAA00770.20 AA00
1135cd1_N_C40_U41AAAAA08860.10 AA08
1145cd1_N_U41_G42AAwAA01800.19 AA01
1155cd1_N_G42_A43AAAAA08860.21 AA08
1165cd1_N_A43_G44AAAAA08750.23 AA08
1175cd1_N_G44_G45AAAAA08940.25 AA08
1185cd1_N_G45_G46ICLIC01600.26 IC01
1195cd1_N_G46_U47NANNANT00.81 OP12
1205cd1_N_U47_C48NANNANT01.65 OP24
1215cd1_N_C48_C49NANNANT00.86 OP06
1225cd1_N_C49_A50AAAAA08680.37 AA08
1235cd1_N_A50_G51AAAAA08770.29 AA08
1245cd1_N_G51_G52AAwAA06940.14 AA06
1255cd1_N_G52_G53AAAAA08550.30 AA08
1265cd1_N_G53_U54AAAAA00750.13 AA00
1275cd1_N_U54_U55AAAAA00430.37 AA00
1285cd1_N_U55_C56NANNANT00.81 OP03
1295cd1_N_C56_A57NANNANT00.55 AB2S
1305cd1_N_A57_A58NANNANT01.07 AA07
1315cd1_N_A58_G59NANNANT00.90 OP29
1325cd1_N_G59_U60NANNANT01.54 OP30
1335cd1_N_U60_C61NANNANT00.80 OP20
1345cd1_N_C61_C62B-ABA08160.57 BA08
1355cd1_N_C62_C63AAAAA00770.21 AA00
1365cd1_N_C63_U64AAAAA08890.18 AA08
1375cd1_N_U64_G65AAAAA08790.19 AA08
1385cd1_N_G65_U66AAAAA00620.15 AA00
1395cd1_N_U66_U67AAAAA08770.20 AA08
1405cd1_N_U67_C68AAAAA00700.20 AA00
1415cd1_N_C68_G69AAAAA00840.15 AA00
1425cd1_N_G69_G70AAAAA00800.18 AA00
1435cd1_N_G70_G71AAAAA00730.19 AA00
1445cd1_N_G71_C72AAwAA06590.24 AA06
1455cd1_N_C72_G73AAwAA05340.44 AA05
1465cd1_N_G73_C74NANNANT00.97 IC01
1475cd1_N_C74_C75NANNANT01.94 AB1S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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